ggKbase home page

PLM3_127_b2_sep16_scaffold_2614

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2614_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists


1..162
-----------------
DNA (162bp)
protein (54aa)
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 bin=bin7_NC10_sister species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_2614_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


166..810
-----------------
DNA (645bp)
protein (215aa)
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rpsC; 30S ribosomal protein S3
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2614_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


821..1237
-----------------
DNA (417bp)
protein (139aa)
50S ribosomal protein L16 bin=GWC2_Methylomirabilis_70_16 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
50S ribosomal protein L16
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2614_4
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists


1249..1452
-----------------
DNA (204bp)
protein (68aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 bin=bin7_NC10_sister species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
50S ribosomal protein L29
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3_127_b2_sep16_scaffold_2614_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


1620..1868
-----------------
DNA (249bp)
protein (83aa)
30S ribosomal protein S17 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S17
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2614_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


1890..2240
-----------------
DNA (351bp)
protein (117aa)
50S ribosomal protein L14 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplN; 50S ribosomal protein L14
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2614_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


2240..2566
-----------------
DNA (327bp)
protein (109aa)
50S ribosomal protein L24 bin=GWA2_Methylomirabilis_73_35 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplX; 50S ribosomal protein L24
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_2614_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


2572..3243
-----------------
DNA (672bp)
protein (224aa)
50S ribosomal protein L5 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplE; 50S ribosomal protein L5
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_2614_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


3250..3435
-----------------
DNA (186bp)
protein (62aa)
50S ribosomal protein L5 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsZ; 30S ribosomal protein S14
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2614_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


3438..3833
-----------------
DNA (396bp)
protein (132aa)
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
30S ribosomal protein S8
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2614_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


3840..4382
-----------------
DNA (543bp)
protein (181aa)
50S ribosomal protein L6 bin=GWC2_Methylomirabilis_70_16 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rplF; 50S ribosomal protein L6
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_2614_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


4379..4744
-----------------
DNA (366bp)
protein (122aa)
50S ribosomal protein L18 bin=GWC2_Methylomirabilis_70_16 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rplR; 50S ribosomal protein L18
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_2614_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


4840..5373
-----------------
DNA (534bp)
protein (178aa)
30S ribosomal protein S5 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S5
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2614_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


5357..5542
-----------------
DNA (186bp)
protein (62aa)
50S ribosomal protein L30 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L30
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2614_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


5532..5999
-----------------
DNA (468bp)
protein (156aa)
50S ribosomal protein L15 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplO; 50S ribosomal protein L15
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2614_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


5996..7330
-----------------
DNA (1335bp)
protein (445aa)
Protein translocase subunit SecY bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
secY; preprotein translocase subunit SecY
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_2614_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7392..8075
-----------------
DNA (684bp)
protein (228aa)
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] bin=bin7_NC10_sister species=Thermodesulfobacterium thermophilum genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
adenylate kinase (EC:2.7.4.3)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2614_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8072..8845
-----------------
DNA (774bp)
protein (258aa)
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] bin=bin7_NC10_sister species=Orenia marismortui genus=Orenia taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
methionine aminopeptidase, type I (EC:3.4.11.18)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2614_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8856..9101
-----------------
DNA (246bp)
protein (82aa)
Translation initiation factor IF-1 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
infA; translation initiation factor IF-1
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2614_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9126..9239
-----------------
DNA (114bp)
protein (38aa)
50S ribosomal protein L36 bin=GWA2_Methylomirabilis_73_35 species=Propionibacterium freudenreichii genus=Propionibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2614_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


9251..9655
-----------------
DNA (405bp)
protein (135aa)
30S ribosomal protein S13 bin=GWA2_Methylomirabilis_73_35 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsM; 30S ribosomal protein S13
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2614_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


9659..10069
-----------------
DNA (411bp)
protein (137aa)
30S ribosomal protein S11 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S11
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2614_23
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


10079..10702
-----------------
DNA (624bp)
protein (208aa)
30S ribosomal protein S4 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsD; 30S ribosomal protein S4
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_2614_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10717..11697
-----------------
DNA (981bp)
protein (327aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_2614_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


11694..12161
-----------------
DNA (468bp)
protein (156aa)
50S ribosomal protein L17 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L17
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Displaying 25 items

View Taxonomy