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PLM3_127_b2_sep16_scaffold_3194

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_3194_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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3..395
-----------------
DNA (393bp)
protein (131aa)
Hypothetical conserved protein bin=GWC2_Methylomirabilis_70_16 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_3194_2
Spiribacter salinus, Spiribacter, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(461..859)
-----------------
DNA (399bp)
protein (133aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Spiribacter.;" source="Spiribacter salinus M19-40.;"
Ribonuclease VapC Tax=Spiribacter salinus M19-40 RepID=R4V667_9GAMM
PilT protein domain-containing protein
PLM3_127_b2_sep16_scaffold_3194_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(886..1173)
-----------------
DNA (288bp)
protein (96aa)
prevent-host-death family protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
prevent-host-death family protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_3194_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1345..1794)
-----------------
DNA (450bp)
protein (150aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=Pusillimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
MaoC domain-containing protein dehydratase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_3194_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(1905..2537)
-----------------
DNA (633bp)
protein (211aa)
ABC transporter related protein bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3194_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(2593..3396)
-----------------
DNA (804bp)
protein (268aa)
ABC transporter related bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3194_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3393..4619)
-----------------
DNA (1227bp)
protein (409aa)
Inner-membrane translocator bin=GWA2_Methylomirabilis_73_35 species=Meiothermus silvanus genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3194_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4616..5587)
-----------------
DNA (972bp)
protein (324aa)
Inner-membrane translocator bin=GWA2_Methylomirabilis_73_35 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_3194_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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comp(5644..6834)
-----------------
DNA (1191bp)
protein (397aa)
Extracellular ligand-binding receptor bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular ligand-binding receptor
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_3194_10

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comp(6954..7700)
-----------------
DNA (747bp)
protein (249aa)
Maleate cis-trans isomerase Tax=uncultured Chloroflexi bacterium HF0500_03M05 RepID=E0XY61_9CHLR
Maleate cis-trans isomerase {ECO:0000313|EMBL:ADI19352.1}; species="Bacteria; Chloroflexi; environmental samples.;" source="uncultured Chloroflexi bacterium HF0500_03M05.;"
Asp/Glu/hydantoin racemase
PLM3_127_b2_sep16_scaffold_3194_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(7733..9070)
-----------------
DNA (1338bp)
protein (446aa)
Acetyl-CoA carboxylase, biotin carboxylase bin=GWC2_Methylomirabilis_70_24 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
acetyl-CoA carboxylase, biotin carboxylase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_3194_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(9071..9553)
-----------------
DNA (483bp)
protein (161aa)
accB; acetyl Coa carboxylase, biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_3194_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(9553..10119)
-----------------
DNA (567bp)
protein (189aa)
Elongation factor P bin=GWC2_Methylomirabilis_70_16 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
translation elongation factor P
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3194_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(10126..10461)
-----------------
DNA (336bp)
protein (112aa)
hypothetical protein bin=bin7_NC10_sister species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3194_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10566..11600)
-----------------
DNA (1035bp)
protein (345aa)
3-dehydroquinate synthase bin=GWC2_Methylomirabilis_70_24 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
3-dehydroquinate synthase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3194_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(11939..13060)
-----------------
DNA (1122bp)
protein (374aa)
Type IV pilus secretin PilQ bin=GWF2_Methylomirabilis_70_14 species=Psychrobacter sp. genus=Psychrobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pilQ; type 4 fimbrial biogenesis protein PilQ
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_3194_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(13692..14708)
-----------------
DNA (1017bp)
protein (339aa)
Probable pilus iv assembly membrane protein pilo bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Pilus assembly protein PilO
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3194_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14710..16320)
-----------------
DNA (1611bp)
protein (537aa)
Type IV pilus assembly protein PilM bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
type IV pilus assembly protein PilM
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_3194_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(16327..17628)
-----------------
DNA (1302bp)
protein (434aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_3194_20
Aeromonas veronii, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17625..18128)
-----------------
DNA (504bp)
protein (168aa)
Hypothetical membrane protein bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Type IV pilus modification protein PilV {ECO:0000313|EMBL:EKB24837.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas veronii AMC34.;"
PLM3_127_b2_sep16_scaffold_3194_21
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(18125..18622)
-----------------
DNA (498bp)
protein (166aa)
Type IV pilus biogenesis protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
fimT; pilus assambly protein
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_3194_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(18746..18967)
-----------------
DNA (222bp)
protein (74aa)
Type 4 prepilin-like proteins leader peptide-processing enzyme bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
PulO; type II secretory pathway, prepilin signal peptidase PulO and related peptidases
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_3194_23
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(18955..19512)
-----------------
DNA (558bp)
protein (186aa)
Type 4 prepilin-like proteins leader peptide-processing enzyme bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptidase A24A domain-containing protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_3194_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19597..21519)
-----------------
DNA (1923bp)
protein (641aa)
Type 4 fimbrial assembly protein pilC bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
pilC; type 4 fimbrial assembly protein pilC
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3194_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21523..22632)
-----------------
DNA (1110bp)
protein (370aa)
Twitching motility protein bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
twitching motility protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3194_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22647..24377)
-----------------
DNA (1731bp)
protein (577aa)
Type IV-A pilus assembly ATPase PilB bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
type II secretion system protein E
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3194_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24378..24914)
-----------------
DNA (537bp)
protein (179aa)
Predicted phosphatase bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Appr-1-p processing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3194_28
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(24911..25711)
-----------------
DNA (801bp)
protein (267aa)
Protein mazG bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
protein mazG
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_3194_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25791..26225
-----------------
DNA (435bp)
protein (145aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3194_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(26274..26786)
-----------------
DNA (513bp)
protein (171aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
Displaying 30 items

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