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PLM3_127_b2_sep16_scaffold_3575

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_3575_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..656)
-----------------
DNA (654bp)
protein (218aa)
Response regulator in two-component regulatory system with KdpD, regulation of potassium translocation (OmpR family) bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
kdpE; response regulator in two-component regulatory system with KdpD, regulation of potassium translocation (OmpR family)
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_3575_2
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(649..2730)
-----------------
DNA (2082bp)
protein (694aa)
kdpD; sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation (EC:2.7.1.-)
Sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJR3_9BACT
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_3575_3
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(2676..3290)
-----------------
DNA (615bp)
protein (205aa)
kdpD; sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation (EC:2.7.1.-)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJR3_9BACT
PLM3_127_b2_sep16_scaffold_3575_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3637..4137
-----------------
DNA (501bp)
protein (167aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3575_5
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(4291..5634)
-----------------
DNA (1344bp)
protein (448aa)
Magnesium transporter bin=GWA2_Ignavibacteria_55_11 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
magnesium transporter
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
PLM3_127_b2_sep16_scaffold_3575_6
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(5824..6393)
-----------------
DNA (570bp)
protein (190aa)
kdpC; P-type ATPase subunit high-affinity potassium transport system subunit C (EC:3.6.3.9)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Potassium-transporting ATPase C chain Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJR2_9BACT
PLM3_127_b2_sep16_scaffold_3575_7
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6409..8478)
-----------------
DNA (2070bp)
protein (690aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
kdpB; K+-transporting ATPase subunit B (EC:3.6.3.12)
potassium-transporting ATPase subunit B Tax=Methylococcus capsulatus RepID=UPI0002D86919
PLM3_127_b2_sep16_scaffold_3575_8
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(8489..10294)
-----------------
DNA (1806bp)
protein (602aa)
kdpA; high-affinity potassium transport system P-type ATPase, , A chain (EC:3.6.3.9)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Potassium-transporting ATPase A chain Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJC7_9BACT
PLM3_127_b2_sep16_scaffold_3575_9
unknown

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comp(10291..10383)
-----------------
DNA (93bp)
protein (31aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3575_10
unknown

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comp(10393..10515)
-----------------
DNA (123bp)
protein (41aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3575_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(10654..11160)
-----------------
DNA (507bp)
protein (169aa)
CBS domain containing membrane protein bin=GWC2_Methylomirabilis_70_16 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_3575_12
unknown

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comp(11697..11918)
-----------------
DNA (222bp)
protein (74aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3575_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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12205..12594
-----------------
DNA (390bp)
protein (130aa)
pcaC; protein PcaC (EC:4.1.1.44)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_3575_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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12582..13361
-----------------
DNA (780bp)
protein (260aa)
histidinol-phosphate phosphatase, putative bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_3575_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13798..14307
-----------------
DNA (510bp)
protein (170aa)
Putative Glycosyl transferase, family 9 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative glycosyl transferase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_3575_16
unknown

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14304..14489
-----------------
DNA (186bp)
protein (62aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3575_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(14536..15603)
-----------------
DNA (1068bp)
protein (356aa)
Hydrolase, carbon-nitrogen family bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Providencia taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_3575_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16008..17090
-----------------
DNA (1083bp)
protein (361aa)
Uroporphyrinogen decarboxylase (URO-D) bin=GWA2_Methylomirabilis_73_35 species=Methanococcus aeolicus genus=Methanococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Uroporphyrinogen decarboxylase (URO-D)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_3575_19
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17134..18900)
-----------------
DNA (1767bp)
protein (589aa)
Adenylate/guanylate cyclase Tax=Oceanibaculum indicum P24 RepID=K2J5Q2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:ETW92716.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
adenylate cyclase
PLM3_127_b2_sep16_scaffold_3575_20
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18912..19760)
-----------------
DNA (849bp)
protein (283aa)
UPI0003A04C7D related cluster Tax=unknown RepID=UPI0003A04C7D
Metallo-beta-lactamase {ECO:0000313|EMBL:GAD21512.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
beta-lactamase domain protein
PLM3_127_b2_sep16_scaffold_3575_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(19896..21272)
-----------------
DNA (1377bp)
protein (459aa)
pyridoxal-phosphate dependent TrpB-like enzyme; K06001 tryptophan synthase beta chain [EC:4.2.1.20] bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
pyridoxal-phosphate dependent TrpB-like enzyme
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3575_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

21450..22676
-----------------
DNA (1227bp)
protein (409aa)
Major facilitator superfamily MFS_1 bin=GWC2_Methylomirabilis_70_16 species=Methylobacter tundripaludum genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
sugar phosphate permease
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_3575_23
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22751..23920
-----------------
DNA (1170bp)
protein (390aa)
Putative formyl-coenzyme A transferase Tax=Bradyrhizobium sp. ORS 285 RepID=H0RXB5_9BRAD
L-carnitine dehydratase/bile acid-inducible protein F
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_127_b2_sep16_scaffold_3575_24
Mycobacterium vulneris, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23938..24903
-----------------
DNA (966bp)
protein (322aa)
hypothetical protein Tax=Sciscionella marina RepID=UPI00037F5956
Putative TIM-barrel fold metal-dependent hydrolase {ECO:0000313|EMBL:CDO31206.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium vulneris.;"
putative amidohydrolase
PLM3_127_b2_sep16_scaffold_3575_25
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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25182..25979
-----------------
DNA (798bp)
protein (266aa)
PHP domain protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TBN5_9CHLR
PHP domain protein {ECO:0000313|EMBL:EFH89817.1}; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
histidinol phosphatase
PLM3_127_b2_sep16_scaffold_3575_26
unknown

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26020..26289
-----------------
DNA (270bp)
protein (90aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3575_27
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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26279..26533
-----------------
DNA (255bp)
protein (85aa)
Tax=RBG_16_Nitrospirae_64_22_curated
PLM3_127_b2_sep16_scaffold_3575_28
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

26590..26871
-----------------
DNA (282bp)
protein (94aa)
Uncharacterized protein Tax=Plesiocystis pacifica SIR-1 RepID=A6GK59_9DELT
hypothetical protein
Tax=RBG_16_Nitrospirae_64_22_curated
PLM3_127_b2_sep16_scaffold_3575_29
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

26874..28475
-----------------
DNA (1602bp)
protein (534aa)
Uncharacterized protein Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XK89_DESMR
hypothetical protein
Tax=RBG_16_Nitrospirae_64_22_curated
PLM3_127_b2_sep16_scaffold_3575_30
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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28472..29359
-----------------
DNA (888bp)
protein (296aa)
SSU ribosomal protein S6P modification protein Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31ER3_THICR
putative ribosomal protein S6
Putative ribosomal protein S6 {ECO:0000313|EMBL:CCQ72148.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
Displaying items 1-30 of 31 in total

View Taxonomy