ggKbase home page

PLM3_127_b2_sep16_scaffold_3982

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_3982_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(3..1136)
DNA (1134bp) protein (378aa)
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] bin=bin7_NC10_sister species=Desulfococcus multivorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
dihydrolipoamide dehydrogenase
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_3982_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(1174..2532)
DNA (1359bp) protein (453aa)
pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component bin=bin7_NC10_sister species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_3982_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(2532..3512)
DNA (981bp) protein (327aa)
transketolase, central region; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] bin=bin7_NC10_sister species=Desulfococcus multivorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
transketolase, central region
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_3982_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(3535..4662)
DNA (1128bp) protein (376aa)
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha (EC:1.2.4.1)
Pyruvate dehydrogenase (Acetyl-transferring) bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_3982_5

Not on your lists

comp(4740..5795)
DNA (1056bp) protein (352aa)
Putative NHL repeat protein Tax=uncultured marine microorganism HF4000_008B14 RepID=B3T125_9ZZZZ
Putative NHL repeat protein {ECO:0000313|EMBL:ABZ06284.1}; species="unclassified sequences; environmental samples.;" source="uncultured marine microorganism HF4000_008B14.;"
alkyl hydroperoxide reductase
PLM3_127_b2_sep16_scaffold_3982_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6170..6616)
DNA (447bp) protein (149aa)
P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein bin=GWA2_Methylomirabilis_73_35 species=Chamaesiphon minutus genus=Chamaesiphon taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_3982_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6622..7452)
DNA (831bp) protein (277aa)
PP-loop domain-containing protein bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
PP-loop domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3982_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7595..8590
DNA (996bp) protein (332aa)
5,10-methylenetetrahydromethanopterin reductase (EC:1.5.99.11)
Putative 5,10-methylenetetrahydromethanopterin reductase bin=GWC2_Methylomirabilis_70_16 species=Pseudoflavonifractor capillosus genus=Pseudoflavonifractor taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3982_9
unknown

Not on your lists

comp(9075..9254)
DNA (180bp) protein (60aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3982_10
unknown

Not on your lists

comp(9429..9596)
DNA (168bp) protein (56aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3982_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9686..10153
DNA (468bp) protein (156aa)
Nitrate/nitrite ABC transporter substrate-binding protein bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nitrate/nitrite ABC transporter substrate-binding protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_3982_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10163..10933
DNA (771bp) protein (257aa)
Nitrate/nitrite ABC transporter membrane protein bin=GWA2_Methylomirabilis_73_35 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nitrate ABC transporter, inner membrane subunit
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_3982_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10938..11717
DNA (780bp) protein (260aa)
ATPase components of various ABC-type transport systems bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter ATPase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_3982_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11724..12494
DNA (771bp) protein (257aa)
Nitrate ABC transporter, ATPase subunits C and D bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nrtD; nitrate/nitrite ABC transporter ATP-binding protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_3982_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12499..14628
DNA (2130bp) protein (710aa)
narB; ferredoxin-nitrate reductase (EC:1.7.7.2)
Molybdopterin oxidoreductase bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_3982_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14625..15080
DNA (456bp) protein (152aa)
nirA; ferredoxin-nitrite reductase (EC:1.7.7.1)
Ferredoxin-nitrite reductase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
Displaying 16 items

View Taxonomy