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PLM3_127_b2_sep16_scaffold_4466

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_4466_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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3..1418
-----------------
DNA (1416bp)
protein (472aa)
Protein export membrane protein, SecD/SecF family bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Protein export membrane protein, SecD/SecF family
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_4466_2
uncultured gamma proteobacterium, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1382..2158)
-----------------
DNA (777bp)
protein (259aa)
Copper resistance protein Tax=uncultured gamma proteobacterium RepID=H5SHF3_9GAMM
Copper resistance protein {ECO:0000313|EMBL:BAL55589.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; environmental samples.;" source="uncultured gamma proteobacterium.;"
copper resistance protein
PLM3_127_b2_sep16_scaffold_4466_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(2158..2904)
-----------------
DNA (747bp)
protein (249aa)
copper resistance D domain-containing protein; K07245 putative copper resistance protein D bin=bin7_NC10_sister species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
copper resistance D domain-containing protein
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_4466_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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2926..3684
-----------------
DNA (759bp)
protein (253aa)
Putative 2-oxoglutarate-Fe(II) oxygenase superfamily bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative 2-oxoglutarate-Fe(II) oxygenase superfamily
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_4466_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3697..4449)
-----------------
DNA (753bp)
protein (251aa)
Putative Sugar nucleotidyltransferase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative sugar nucleotidyltransferase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_4466_6
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4509..5030)
-----------------
DNA (522bp)
protein (174aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00035CA5AE
Nodulation protein W {ECO:0000313|EMBL:EZP47713.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
two component regulator
PLM3_127_b2_sep16_scaffold_4466_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(5027..5689)
-----------------
DNA (663bp)
protein (221aa)
TENA/THI-4 family bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
TENA/THI-4 family
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_4466_8
unknown

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5696..5968
-----------------
DNA (273bp)
protein (91aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_4466_9
Methylococcaceae bacterium Sn10-6, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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6087..7607
-----------------
DNA (1521bp)
protein (507aa)
hypothetical protein Tax=Methylovulum miyakonense RepID=UPI00036D534C
Uncharacterized protein {ECO:0000313|EMBL:KJV05934.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae.;" source="Methylococcaceae bacterium Sn10-6.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_4466_10
RLO_PLX_64_10, Bacteria

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7664..8938
-----------------
DNA (1275bp)
protein (425aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00037E5BE6
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3_127_b2_sep16_scaffold_4466_11
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

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8935..9753
-----------------
DNA (819bp)
protein (273aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036F1E20
high-affinity nickel-transporter
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3_127_b2_sep16_scaffold_4466_12
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

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9699..10649
-----------------
DNA (951bp)
protein (317aa)
High-affinity nickel-transporter Tax=Crinalium epipsammum PCC 9333 RepID=K9W744_9CYAN
high-affinity nickel-transporter
Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
PLM3_127_b2_sep16_scaffold_4466_13
unknown

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10920..11810
-----------------
DNA (891bp)
protein (297aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_4466_14
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11849..12568
-----------------
DNA (720bp)
protein (240aa)
Uncharacterized protein Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2GM91_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EWY36983.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_4466_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

12644..14590
-----------------
DNA (1947bp)
protein (649aa)
acsA; acetyl-coenzyme A synthetase (Acetate--CoA ligase) (Acyl-activating enzyme) (EC:6.2.1.1)
Acetyl-coenzyme A synthetase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_4466_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14606..14926
-----------------
DNA (321bp)
protein (107aa)
id=4895587 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_4466_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15048..17138
-----------------
DNA (2091bp)
protein (697aa)
dehydrogenase (EC:1.6.99.5)
Putative dehydrogenase, similar to gamma (5') and beta (3') subunits of formate dehydrogenase and to nuoE and nuoF of NADH dehydrogenase (FdhB2/C2) bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_4466_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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17135..18658
-----------------
DNA (1524bp)
protein (508aa)
fdhA; formate dehydrogenase, alpha subunit (fdhA2) (EC:1.2.1.2)
Formate dehydrogenase, alpha subunit (FdhA2) bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 18 items

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