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PLM3_127_b2_sep16_scaffold_1743

Search features with annotation key words

Displaying items 31-53 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1743_31
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(28228..28989)
-----------------
DNA (762bp)
protein (254aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1743_32
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(28986..30410)
-----------------
DNA (1425bp)
protein (475aa)
(4Fe-4S) cluster-containing protein bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iron-sulfur cluster binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_33
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(30407..31147)
-----------------
DNA (741bp)
protein (247aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1743_34
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(31144..31467)
-----------------
DNA (324bp)
protein (108aa)
Cupin domain protein bin=GWF2_Methylomirabilis_70_14 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cupin domain-containing protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1743_35
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(31464..34199)
-----------------
DNA (2736bp)
protein (912aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1743_36
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(34204..35649)
-----------------
DNA (1446bp)
protein (482aa)
glcD; glycolate oxidase subunit GlcD (EC:1.1.3.15)
Glycolate oxidase, subunit GlcD bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_37
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(35717..36751)
-----------------
DNA (1035bp)
protein (345aa)
2-oxoglutarate ferredoxin oxidoreductase subunit beta bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-oxoglutarate ferredoxin oxidoreductase subunit beta
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_38
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(36748..38619)
-----------------
DNA (1872bp)
protein (624aa)
2-oxoglutarate ferredoxin oxidoreductase subunit alpha bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1743_39
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(38801..38983)
-----------------
DNA (183bp)
protein (61aa)
LysR substrate-binding protein bin=GWA2_Methylomirabilis_73_35 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_1743_40
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(38980..39606)
-----------------
DNA (627bp)
protein (209aa)
LysR substrate-binding protein bin=GWA2_Methylomirabilis_73_35 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_1743_41
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

39683..44302
-----------------
DNA (4620bp)
protein (1540aa)
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13)
Glutamate synthase [NADPH] large chain (NADPH-GOGAT) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MM42_9BACT
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1743_42
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

44295..45740
-----------------
DNA (1446bp)
protein (482aa)
gltD; glutamate synthase [NADPH] small chain (EC:1.4.1.13)
Glutamate synthase [NADPH] small chain, (NADPH-GOGAT) bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_1743_43
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

45748..46263
-----------------
DNA (516bp)
protein (172aa)
hypothetical protein bin=bin7_NC10_sister species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1743_44
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(46386..46475)
-----------------
DNA (90bp)
protein (30aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1743_45
unknown

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46499..47179
-----------------
DNA (681bp)
protein (227aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1743_46
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(47019..48044)
-----------------
DNA (1026bp)
protein (342aa)
moaA; molybdenum cofactor biosynthesis protein A; K03639 molybdenum cofactor biosynthesis protein bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
moaA; molybdenum cofactor biosynthesis protein A
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_1743_47
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(48044..49744)
-----------------
DNA (1701bp)
protein (567aa)
Radical SAM domain iron-sulfur cluster-binding oxidoreductase bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
radical SAM domain-containing protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1743_48
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(49790..50581)
-----------------
DNA (792bp)
protein (264aa)
lgt; prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_49
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50754..50984
-----------------
DNA (231bp)
protein (77aa)
Putative dipeptide ABC transporter, permease protein DppC Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZX33_9PROT
Putative dipeptide ABC transporter, permease protein DppC {ECO:0000313|EMBL:EHM02423.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
binding--dependent transport system inner membrane component family protein
PLM3_127_b2_sep16_scaffold_1743_50
unknown

Not on your lists

comp(51008..51523)
-----------------
DNA (516bp)
protein (172aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1743_51
Microcystis aeruginosa, Microcystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(51581..51802)
-----------------
DNA (222bp)
protein (74aa)
YcfA family protein Tax=Microcystis aeruginosa RepID=I4FAV3_MICAE
YcfA family protein {ECO:0000313|EMBL:CCH92778.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.;" source="Microcystis aeruginosa PCC 9432.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_1743_52
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(51830..52147)
-----------------
DNA (318bp)
protein (106aa)
Putative uncharacterized protein Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RM36_MOOTA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC18503.1}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella thermoacetica (strain ATCC 39073).;"
PLM3_127_b2_sep16_scaffold_1743_53

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comp(52152..52409)
-----------------
DNA (258bp)
protein (86aa)
Marine sediment metagenome DNA, contig: S06H3_S15003 {ECO:0000313|EMBL:GAI45414.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Putative uncharacterized protein bin=GWC2_OP3-like_45_7 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
hypothetical protein
Displaying items 31-53 of 53 in total

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