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PLM3_127_b2_sep16_scaffold_1743

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1743_1
R_Acidobacteria_59_13, Acidobacteria, Bacteria

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3..137
-----------------
DNA (135bp)
protein (45aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM3_127_b2_sep16_scaffold_1743_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(291..1811)
-----------------
DNA (1521bp)
protein (507aa)
MFS transporter xanthine/uracil permease bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MFS transporter xanthine/uracil permease
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(1853..2158)
-----------------
DNA (306bp)
protein (102aa)
id=4810598 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1743_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(2203..4491)
-----------------
DNA (2289bp)
protein (763aa)
nrd; ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase bin=GWC2_Methylomirabilis_70_16 species=RAAC19 genus=RAAC19 taxon_order=RAAC19 taxon_class=RAAC19 phylum=OP11 tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1743_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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4665..6062
-----------------
DNA (1398bp)
protein (466aa)
Type I secretion outer membrane protein bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
type I secretion outer membrane protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1743_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6092..7774
-----------------
DNA (1683bp)
protein (561aa)
Putative Efflux transporter, RND family, MFP subunit bin=GWA2_Methylomirabilis_73_35 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
efflux transporter MFP subunit
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7771..8520
-----------------
DNA (750bp)
protein (250aa)
Putative transporter subunit: ATP-binding component of ABC superfamily bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ybbA; transporter subunit: ATP-binding component of ABC superfamily
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1743_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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8517..9749
-----------------
DNA (1233bp)
protein (411aa)
Export ABC transporter permease bin=GWA2_Methylomirabilis_73_35 species=Ralstonia sp. PBA genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
export ABC transporter permease
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1743_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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9963..10295
-----------------
DNA (333bp)
protein (111aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(10406..10879)
-----------------
DNA (474bp)
protein (158aa)
Cyclase/dehydrase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cyclase/dehydrase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1743_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(10952..11263)
-----------------
DNA (312bp)
protein (104aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen bin=GWC2_Methylomirabilis_70_24 species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
alkyl hydroperoxide reductase
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_1743_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(11273..11419)
-----------------
DNA (147bp)
protein (49aa)
bcp; Putative peroxiredoxin bcp (EC:1.11.1.15)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Brevibacillus borstelensis genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_1743_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11416..12357)
-----------------
DNA (942bp)
protein (314aa)
hypothetical protein; K07022 bin=bin7_NC10_sister species=Pyrococcus yayanosii genus=Pyrococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_14
unknown

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comp(12417..12584)
-----------------
DNA (168bp)
protein (56aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1743_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12569..12910)
-----------------
DNA (342bp)
protein (114aa)
MGMT family protein bin=GWA2_Methylomirabilis_73_35 species=Salinisphaera shabanensis genus=Salinisphaera taxon_order=Salinisphaerales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12927..14717)
-----------------
DNA (1791bp)
protein (597aa)
ABC transporter related protein bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter ATP-binding protein/membrane protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14710..16350)
-----------------
DNA (1641bp)
protein (547aa)
ABC transporter related protein bin=GWC2_Methylomirabilis_70_24 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC transporter ATP-binding protein/membrane protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16440..17279)
-----------------
DNA (840bp)
protein (280aa)
2-dehydropantoate 2-reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase bin=GWF2_Methylomirabilis_70_14 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(17466..18566)
-----------------
DNA (1101bp)
protein (367aa)
Magnesium and cobalt transport protein CorA Tax=Geitlerinema sp. PCC 7407 RepID=K9S647_9CYAN bin=16ft_combo_ws3_JS1 species=Geitlerinema sp. PCC 7407 genus=Geitlerinema taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Magnesium and cobalt transport protein CorA
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18633..19421
-----------------
DNA (789bp)
protein (263aa)
suhB; inositol monophosphatase (EC:3.1.3.25)
Histidinol-phosphate phosphatase, putative bin=GWA2_Methylomirabilis_73_35 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(19457..19924)
-----------------
DNA (468bp)
protein (156aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1743_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(19924..21153)
-----------------
DNA (1230bp)
protein (410aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dioxygenase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21150..22367)
-----------------
DNA (1218bp)
protein (406aa)
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22394..22696)
-----------------
DNA (303bp)
protein (101aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22748..24124)
-----------------
DNA (1377bp)
protein (459aa)
Conserved uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RmuC-domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24121..25089)
-----------------
DNA (969bp)
protein (323aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25173..25970
-----------------
DNA (798bp)
protein (266aa)
Probable L-aspartate dehydrogenase bin=GWA2_Methylomirabilis_73_35 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative L-aspartate dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1743_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(25977..26915)
-----------------
DNA (939bp)
protein (313aa)
Thioredoxin reductase bin=GWA2_Methylomirabilis_73_35 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thioredoxin reductase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1743_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(27082..27834)
-----------------
DNA (753bp)
protein (251aa)
HAD superfamily (Subfamily IA) hydrolase, TIGR02254 bin=GWA2_Methylomirabilis_73_35 species=Pedobacter saltans genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HAD family hydrolase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1743_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(27834..28280)
-----------------
DNA (447bp)
protein (149aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
Displaying items 1-30 of 53 in total

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