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PLM3_127_b2_sep16_scaffold_1903

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1903_1
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..840)
-----------------
DNA (840bp)
protein (280aa)
Carbohydrate-binding family V/XII protein Tax=Chitiniphilus shinanonensis RepID=F8WSS7_9NEIS
Uncharacterized protein {ECO:0000313|EMBL:EXI79755.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-92.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_1903_2
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(906..1763)
-----------------
DNA (858bp)
protein (286aa)
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA {ECO:0000256|HAMAP-Rule:MF_00905}; Short=3',5'-cyclic AMP phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_00905};; Short=cAMP phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_00905};; EC=3.1.4.17 {ECO:0000256|HAMAP-Rule:MF_00905};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZAD3_AZOL4
putative metallophosphodiesterase
PLM3_127_b2_sep16_scaffold_1903_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(1987..3666)
-----------------
DNA (1680bp)
protein (560aa)
ABC transporter related protein bin=GWF2_Methylomirabilis_70_14 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1903_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(3810..4253)
-----------------
DNA (444bp)
protein (148aa)
CoA-binding domain protein bin=GWA2_Methylomirabilis_73_35 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
CoA-binding domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1903_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(4264..5439)
-----------------
DNA (1176bp)
protein (392aa)
3'-5' exonuclease bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3'-5' exonuclease
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1903_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5441..6247)
-----------------
DNA (807bp)
protein (269aa)
Short-chain dehydrogenase/reductase SDR bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1903_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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6406..6894
-----------------
DNA (489bp)
protein (163aa)
Endoribonuclease L-PSP bin=GWA2_Methylomirabilis_73_35 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
translation initiation inhibitor
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1903_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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6945..7796
-----------------
DNA (852bp)
protein (284aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
2-hydroxy-3-oxopropionate reductase bin=GWC2_Methylomirabilis_70_24 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_1903_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(7961..8539)
-----------------
DNA (579bp)
protein (193aa)
Predicted protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Micromonas taxon_order=Mamiellales taxon_class=Mamiellophyceae phylum=Chlorophyta tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative endopeptidase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1903_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(8587..9777)
-----------------
DNA (1191bp)
protein (397aa)
Putative dehydratase/racemase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dehydratase/racemase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1903_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(10281..11195)
-----------------
DNA (915bp)
protein (305aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
actA; menaquinol oxidoreductase complex ACIII, cytochrome c subunit ActA
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_1903_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11200..12270)
-----------------
DNA (1071bp)
protein (357aa)
Putative lipoprotein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lipoprotein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1903_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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12437..12667
-----------------
DNA (231bp)
protein (77aa)
id=14627824 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_1903_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(12679..13545)
-----------------
DNA (867bp)
protein (289aa)
RNA pseudouridylate synthase bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNA pseudouridylate synthase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1903_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13571..14905)
-----------------
DNA (1335bp)
protein (445aa)
processing peptidase (EC:3.4.24.64) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
processing peptidase (EC:3.4.24.64)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1903_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14902..16245)
-----------------
DNA (1344bp)
protein (448aa)
Putative Zn-dependent peptidase bin=GWC2_Methylomirabilis_70_24 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
peptidase M16 domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1903_17
R_NC10_66_22, NC10, Bacteria

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comp(16242..16853)
-----------------
DNA (612bp)
protein (204aa)
Sulfoxide reductase heme-binding subunit YedZ bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_1903_18
R_NC10_66_22, NC10, Bacteria

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comp(16966..17925)
-----------------
DNA (960bp)
protein (320aa)
Sulfoxide reductase catalytic subunit YedY bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_1903_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18141..18629)
-----------------
DNA (489bp)
protein (163aa)
DNA-binding response regulator bin=GWA2_Methylomirabilis_73_35 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA-binding response regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1903_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18587..18742)
-----------------
DNA (156bp)
protein (52aa)
DNA-binding response regulator bin=GWA2_Methylomirabilis_73_35 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1903_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(18746..20230)
-----------------
DNA (1485bp)
protein (495aa)
Integral membrane sensor signal transduction histidine kinase bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integral membrane sensor signal transduction histidine kinase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1903_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20259..20570)
-----------------
DNA (312bp)
protein (104aa)
Cytochrome c biogenesis protein, transmembrane region bin=GWA2_Methylomirabilis_73_35 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiol-disulfide isomerase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1903_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20586..20792)
-----------------
DNA (207bp)
protein (69aa)
Putative thioredoxin bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thioredoxin
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1903_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

21062..21808
-----------------
DNA (747bp)
protein (249aa)
Glycosyl transferase family 2 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative glycosyltransferase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1903_25
RLO_RIF03_38_15, RIF3, Bacteria

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21805..22947
-----------------
DNA (1143bp)
protein (381aa)
Male sterility domain protein Tax=Rhodopirellula europaea SH398 RepID=M5SB61_9PLAN
NAD-dependent epimerase/dehydratase
Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
PLM3_127_b2_sep16_scaffold_1903_26
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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22914..23693
-----------------
DNA (780bp)
protein (260aa)
hypothetical protein bin=bin7_NC10_sister species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_1903_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23747..24373
-----------------
DNA (627bp)
protein (209aa)
Uncharacterized protein Tax=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) RepID=I0IIX3_PHYMF
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1903_28
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(24315..24965)
-----------------
DNA (651bp)
protein (217aa)
O-methyltransferase mdmC Tax=Halomonas sp. A3H3 RepID=T2LEN2_9GAMM
methyltransferase
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM3_127_b2_sep16_scaffold_1903_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24962..25201)
-----------------
DNA (240bp)
protein (80aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Sagittula stellata genus=Sagittula taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1903_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(25716..26666)
-----------------
DNA (951bp)
protein (317aa)
glutamate formiminotransferase (EC:2.1.2.5); K00603 glutamate formiminotransferase [EC:2.1.2.5] bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
glutamate formiminotransferase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Displaying items 1-30 of 33 in total

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