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PLM3_127_b2_sep16_scaffold_698

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_698_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1..339
-----------------
DNA (339bp)
protein (113aa)
formylmethionine deformylase (EC:3.5.1.88)
peptide deformylase bin=bin7_NC10_sister species=Thioflavicoccus mobilis genus=Thioflavicoccus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_698_2
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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441..1406
-----------------
DNA (966bp)
protein (322aa)
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3_127_b2_sep16_scaffold_698_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1403..2749
-----------------
DNA (1347bp)
protein (449aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
sun protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_698_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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2846..3517
-----------------
DNA (672bp)
protein (224aa)
HAD-superfamily hydrolase; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] bin=bin7_NC10_sister species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_698_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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3587..4936
-----------------
DNA (1350bp)
protein (450aa)
Signal recognition particle protein bin=GWC2_Methylomirabilis_70_16 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
signal recognition particle subunit FFH/SRP54 (srp54)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_698_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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4941..5186
-----------------
DNA (246bp)
protein (82aa)
30S ribosomal protein S16 bin=GWC2_Methylomirabilis_70_16 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
30S ribosomal protein S16
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_698_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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5176..5700
-----------------
DNA (525bp)
protein (175aa)
16S rRNA-processing protein RimM bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
16S rRNA processing protein RimM
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_698_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5712..6455
-----------------
DNA (744bp)
protein (248aa)
tRNA (Guanine-N1)-methyltransferase bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA (guanine-N1)-methyltransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_698_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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6483..6881
-----------------
DNA (399bp)
protein (133aa)
50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 bin=bin7_NC10_sister species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
rplS; 50S ribosomal protein L19
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_698_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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6894..7535
-----------------
DNA (642bp)
protein (214aa)
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII bin=GWA2_Methylomirabilis_73_35 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_698_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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7670..8116
-----------------
DNA (447bp)
protein (149aa)
UPF0102 protein STH1475 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_698_12
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

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8116..9276
-----------------
DNA (1161bp)
protein (387aa)
cysteine synthase A (EC:2.5.1.47)
Cysteine synthase A bin=GWA2_Methylomirabilis_73_35 species=Candidatus Caldiarchaeum subterraneum genus=Candidatus Caldiarchaeum taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RBG_16_Zixibacteria_53_22_curated
PLM3_127_b2_sep16_scaffold_698_13
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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9273..10229
-----------------
DNA (957bp)
protein (319aa)
gctA; glutaconate CoA transferase subunit A (EC:2.8.3.12)
Glutaconate CoA-transferase, subunit A Tax=Saccharopolyspora erythraea RepID=A4FJB8_SACEN
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_127_b2_sep16_scaffold_698_14
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10357..11127
-----------------
DNA (771bp)
protein (257aa)
hypothetical protein Tax=Xanthobacteraceae RepID=UPI00036C1319
coenzyme A transferase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_127_b2_sep16_scaffold_698_15
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11224..12159
-----------------
DNA (936bp)
protein (312aa)
hypothetical protein Tax=Xanthobacteraceae RepID=UPI000370A913
luciferase-like protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_127_b2_sep16_scaffold_698_16
unknown

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12270..12434
-----------------
DNA (165bp)
protein (55aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_698_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

12445..13374
-----------------
DNA (930bp)
protein (310aa)
dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
dihydrodipicolinate synthetase
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_698_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

13679..14980
-----------------
DNA (1302bp)
protein (434aa)
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
extracellular ligand-binding receptor
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_698_19
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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15064..15960
-----------------
DNA (897bp)
protein (299aa)
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
braD; inner-membrane translocator
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_698_20
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

15964..16938
-----------------
DNA (975bp)
protein (325aa)
inner-membrane translocator bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
livM; high-affinity branched-chain amino acid transport system permease livM
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_698_21

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16931..17683
-----------------
DNA (753bp)
protein (251aa)
Branched-chain amino acid transport system ATP-binding protein Tax=uncultured prokaryote RepID=H5SIP3_9ZZZZ
Branched-chain amino acid transport system ATP-binding protein {ECO:0000313|EMBL:BAL56029.1}; species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
branched-chain amino acid ABC transporter ATP-binding protein
PLM3_127_b2_sep16_scaffold_698_22
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

17686..18336
-----------------
DNA (651bp)
protein (217aa)
livF; high-affinity branched-chain amino acid transport ATP-binding protein LivF bin=bin7_NC10_sister species=Afipia birgiae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
high-affinity branched-chain amino acid transport ATP-binding protein LivF
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_698_23
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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18333..18842
-----------------
DNA (510bp)
protein (170aa)
Tax=RBG_13_Deltaproteobacteria_47_9_curated
PLM3_127_b2_sep16_scaffold_698_24
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

19027..20640
-----------------
DNA (1614bp)
protein (538aa)
transcriptional regulator bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
comM; competence ATPase ComM
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_698_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20787..21434)
-----------------
DNA (648bp)
protein (216aa)
putative lytic murein transglycosylase (EC:3.2.1.-)
Lytic transglycosylase, catalytic bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_698_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21652..24048)
-----------------
DNA (2397bp)
protein (799aa)
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53) bin=bin7_NC10_sister species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin7_NC10_sister organism_group=NC10
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_698_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24070..24456)
-----------------
DNA (387bp)
protein (129aa)
Transcriptional regulator bin=GWA2_Methylomirabilis_73_35 species=Hydrogenivirga sp. 128-5-R1-1 genus=Hydrogenivirga taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MerR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_698_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24515..25399)
-----------------
DNA (885bp)
protein (295aa)
DnaJ-class molecular chaperone with C-terminal Zn finger domain bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
chaperone protein DnaJ
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_698_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(25403..27241)
-----------------
DNA (1839bp)
protein (613aa)
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Displaying 29 items

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