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PLM3_127_b2_sep16_scaffold_827

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_827_1
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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3..434
-----------------
DNA (432bp)
protein (144aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
phoR; alkaline phosphatase synthesis sensor protein PhoR (EC:2.7.3.-)
alkaline phosphatase Tax=Bacillus vallismortis RepID=UPI0002884E8E
PLM3_127_b2_sep16_scaffold_827_2
unknown

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comp(569..805)
-----------------
DNA (237bp)
protein (79aa)
id=3449078 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
PLM3_127_b2_sep16_scaffold_827_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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946..1569
-----------------
DNA (624bp)
protein (208aa)
Thioesterase superfamily protein bin=GWA2_Methylomirabilis_73_35 species=Vulcanisaeta moutnovskia genus=Vulcanisaeta taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA hydrolase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_827_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1743..2495
-----------------
DNA (753bp)
protein (251aa)
Probable transcriptional regulatory protein DAMO_2401 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_827_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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2563..3015
-----------------
DNA (453bp)
protein (151aa)
crossover junction endodeoxyribonuclease ruvC bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
crossover junction endodeoxyribonuclease RuvC
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_827_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3012..3674
-----------------
DNA (663bp)
protein (221aa)
Holliday junction ATP-dependent DNA helicase RuvA bin=GWC2_Methylomirabilis_70_24 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
DNA recombination protein RuvA domain I
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_827_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3671..4717
-----------------
DNA (1047bp)
protein (349aa)
Holliday junction ATP-dependent DNA helicase RuvB bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ruvB; Holliday junction DNA helicase RuvB
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_827_8
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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4714..4929
-----------------
DNA (216bp)
protein (72aa)
Uncharacterized protein Tax=Geobacter metallireducens RepID=Q39XM9_GEOMG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB30995.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM3_127_b2_sep16_scaffold_827_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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4926..6083
-----------------
DNA (1158bp)
protein (386aa)
SpoIID/LytB domain protein bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
SpoIID/LytB domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_827_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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6083..6418
-----------------
DNA (336bp)
protein (112aa)
Export-related chaperone CsaA bin=GWC2_Methylomirabilis_70_16 species=Paracoccus denitrificans genus=Paracoccus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
export-related chaperone CsaA
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_827_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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6524..7576
-----------------
DNA (1053bp)
protein (351aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
S-adenosylmethionine--tRNA ribosyltransferase-isomerase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_827_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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7611..8774
-----------------
DNA (1164bp)
protein (388aa)
Queuine tRNA-ribosyltransferase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
queuine tRNA-ribosyltransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_827_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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8781..9125
-----------------
DNA (345bp)
protein (115aa)
Preprotein translocase subunit YajC bin=GWA2_Methylomirabilis_73_35 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yajC; preprotein translocase subunit YajC
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_827_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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9118..10674
-----------------
DNA (1557bp)
protein (519aa)
protein translocase subunit; K03072 preprotein translocase subunit SecD bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
protein translocase subunit
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_827_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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10671..11657
-----------------
DNA (987bp)
protein (329aa)
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
preprotein translocase subunit SecF
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_827_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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11699..13870
-----------------
DNA (2172bp)
protein (724aa)
relA; GTP pyrophosphokinase (EC:2.7.6.5) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
relA; GTP pyrophosphokinase (EC:2.7.6.5)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_827_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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13886..14266
-----------------
DNA (381bp)
protein (127aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_827_18
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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14271..16130
-----------------
DNA (1860bp)
protein (620aa)
hypothetical protein bin=bin7_NC10_sister species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_827_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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16205..17254
-----------------
DNA (1050bp)
protein (350aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_827_20
unknown

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comp(17248..17481)
-----------------
DNA (234bp)
protein (78aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_827_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(17520..17711)
-----------------
DNA (192bp)
protein (64aa)
50S ribosomal protein L28 bin=GWA2_Methylomirabilis_73_35 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L28
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_827_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17756..19867
-----------------
DNA (2112bp)
protein (704aa)
ATP-dependent DNA helicase RecG bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ATP-dependent DNA helicase RecG
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_827_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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19974..20531
-----------------
DNA (558bp)
protein (186aa)
Methyltransferase bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methyltransferase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_827_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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20576..21172
-----------------
DNA (597bp)
protein (199aa)
Phosphopantetheine adenylyltransferase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pantetheine-phosphate adenylyltransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_827_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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21192..22385
-----------------
DNA (1194bp)
protein (398aa)
aatA; aspartate aminotransferase A (AspAT) (EC:2.6.1.1) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
aatA; aspartate aminotransferase A (AspAT) (EC:2.6.1.1)
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_827_26
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

22414..22857
-----------------
DNA (444bp)
protein (148aa)
Carbon monoxide dehydrogenase subunit G bin=GWA2_Methylomirabilis_73_35 species=Thermobispora bispora genus=Thermobispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
carbon monoxide dehydrogenase subunit G
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_827_27
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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22854..23729
-----------------
DNA (876bp)
protein (292aa)
carbon monoxide dehydrogenase (EC:1.2.99.2)
Carbon-monoxide dehydrogenase bin=GWC2_Methylomirabilis_70_16 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_827_28
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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23737..24219
-----------------
DNA (483bp)
protein (161aa)
(2Fe-2S)-binding protein bin=GWF2_Methylomirabilis_70_14 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
(2Fe-2S)-binding domain-containing protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_827_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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24225..25457
-----------------
DNA (1233bp)
protein (411aa)
Phenylacetate--CoA ligase bin=GWF2_Methylomirabilis_70_14 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
paaK; phenylacetate-CoA ligase
Tax=GWA2_Rokubacteria_73_35_curated
Displaying 29 items

View Taxonomy