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PLM3_127_b2_sep16_scaffold_2020

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2020_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1..120)
DNA (120bp) protein (40aa)
Elongation factor Tu Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6QDQ1_9FIRM
translation elongation factor 1A (EF-1A/EF-Tu)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_127_b2_sep16_scaffold_2020_2
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(150..611)
DNA (462bp) protein (154aa)
fusA-3; elongation factor G; K02355 elongation factor G bin=bin1_lowGC species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
translation elongation factor 2 (EF-2/EF-G)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2020_3
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(760..2133)
DNA (1374bp) protein (458aa)
fusA-3; elongation factor G; K02355 elongation factor G bin=bin1_lowGC species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
translation elongation factor 2 (ef-2/ef-g)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2020_4
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(2153..2623)
DNA (471bp) protein (157aa)
rpsG; 30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 bin=bin1_lowGC species=Oligotropha carboxidovorans genus=Oligotropha taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
RpsG; 30S ribosomal protein S7
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2020_5
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(2639..3010)
DNA (372bp) protein (124aa)
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 bin=bin1_lowGC species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
30S ribosomal protein S12
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2020_6
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(3175..4449)
DNA (1275bp) protein (425aa)
purD; phosphoribosylamine--glycine ligase; K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13] bin=bin1_lowGC species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2020_7
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(4585..6420)
DNA (1836bp) protein (612aa)
glucosamine/fructose-6-phosphate aminotransferase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] bin=bin1_lowGC species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
glucosamine--fructose-6-phosphate aminotransferase (isomerizing) (EC:2.6.1.16)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2020_8
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(6420..7784)
DNA (1365bp) protein (455aa)
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] bin=bin1_lowGC species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
UDP-N-acetylglucosamine pyrophosphorylase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2020_9
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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comp(7814..8155)
DNA (342bp) protein (114aa)
Cupin 2 conserved barrel domain protein bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
cupin
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_2020_10
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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comp(8255..8686)
DNA (432bp) protein (144aa)
ssb-2; single-strand binding protein; K03111 single-strand DNA-binding protein bin=bin1_lowGC species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
single-strand binding protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_2020_11
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(8915..9505)
DNA (591bp) protein (197aa)
hypothetical protein bin=bin1_lowGC species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=bin1_lowGC organism_group=Unknown_CP
NUDIX hydrolase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2020_12
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(9486..10037)
DNA (552bp) protein (184aa)
appr-1-p processing domain-containing protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
appr-1-p processing domain-containing protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2020_13
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

10278..12002
DNA (1725bp) protein (575aa)
PHP domain-containing protein; K02347 DNA polymerase (family X) bin=bin1_lowGC species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin1_lowGC organism_group=Unknown_CP
DNA polymerase III
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2020_14
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

12093..14114
DNA (2022bp) protein (674aa)
DNA ligase, NAD-dependent (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] bin=bin1_lowGC species=Thermodesulfatator atlanticus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin1_lowGC organism_group=Unknown_CP
NAD-dependent DNA ligase (EC:6.5.1.2)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2020_15
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(14500..15009)
DNA (510bp) protein (170aa)
TrmH family RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] bin=bin1_lowGC species=Exiguobacterium pavilionensis genus=Exiguobacterium taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
yacO; putative TrmH family tRNA/rRNA methyltransferase YacO (EC:2.1.1.-)
Tax=CSP1_2_Dadabacteria
Displaying 15 items

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