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PLM3_127_b2_sep16_scaffold_3592

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_3592_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1..120)
DNA (120bp) protein (40aa)
Elongation factor Tu Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6QDQ1_9FIRM
translation elongation factor 1A (EF-1A/EF-Tu)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_127_b2_sep16_scaffold_3592_2
unknown

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comp(290..781)
DNA (492bp) protein (164aa)
id=14425810 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
PLM3_127_b2_sep16_scaffold_3592_trna_4
unknown

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comp(316..388)
DNA (73bp)
transferRNA Thr
PLM3_127_b2_sep16_scaffold_3592_trna_3
unknown

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comp(399..472)
DNA (74bp)
transferRNA Gly
PLM3_127_b2_sep16_scaffold_3592_trna_2
unknown

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comp(588..670)
DNA (83bp)
transferRNA Tyr
PLM3_127_b2_sep16_scaffold_3592_trna_1
unknown

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comp(801..872)
DNA (72bp)
transferRNA Thr
PLM3_127_b2_sep16_scaffold_3592_3
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(1002..1442)
DNA (441bp) protein (147aa)
fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase fabz (EC:4.2.1.-); K02372 3R-hydroxymyristoyl ACP dehydrase [EC:4.2.1.-] bin=bin1_lowGC species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
fabZ; 3R-hydroxymyristoyl ACP dehydrase (EC:4.2.1.60)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3592_4
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(1511..2020)
DNA (510bp) protein (170aa)
outer membrane chaperone Skp; K06142 outer membrane protein bin=bin1_lowGC species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
outer membrane protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3592_5
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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comp(2038..4329)
DNA (2292bp) protein (764aa)
yaeT; outer membrane protein assembly complex protein YaeT; K07277 outer membrane protein bin=bin1_lowGC species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
surface antigen (D15)
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_3592_6
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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comp(4319..4678)
DNA (360bp) protein (120aa)
lolD; lipoprotein release ABC transporter, ATP-binding protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
lipoprotein releasing system, ATP-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_3592_7
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(4686..5045)
DNA (360bp) protein (120aa)
lolD; lipoprotein release ABC transporter, ATP-binding protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
lipoprotein releasing system ATP-binding protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3592_8
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(5042..6340)
DNA (1299bp) protein (433aa)
lipoprotein releasing system transmembrane protein LolC/E family; K09808 lipoprotein-releasing system permease protein bin=bin1_lowGC species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
lipoprotein releasing system, permease component
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3592_9
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(6337..7800)
DNA (1464bp) protein (488aa)
lysS; lysyl-tRNA synthetase (EC:6.1.1.6); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] bin=bin1_lowGC species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
lysS; lysine--tRNA ligase (EC:6.1.1.6)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3592_10
Smithella sp. ME-1, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7949..8842)
DNA (894bp) protein (298aa)
Uncharacterized protein Tax=Smithella sp. ME-1 RepID=V4FIN9_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ESP63029.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. ME-1.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_3592_11
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(8826..10031)
DNA (1206bp) protein (402aa)
transport protein, belonging to the Major Facilitator Superfamily, of which narK is a member bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
transport protein, belonging to the Major Facilitator Superfamily, of which narK is a member
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3592_12
unknown

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comp(10081..10224)
DNA (144bp) protein (48aa)

This feature has no annotations

Displaying 16 items

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