ggKbase home page

PLM3_127_b2_sep16_scaffold_16448

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_16448_1
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

2..547
DNA (546bp) protein (182aa)
hisH; imidazole glycerol phosphate synthase subunit HisH; K02501 glutamine amidotransferase [EC:2.4.2.-] bin=bin1_lowGC species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
hisH; glutamine amidotransferase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_16448_2
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(611..2458)
DNA (1848bp) protein (616aa)
lytic transglycosylase; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-] bin=bin1_lowGC species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
soluble lytic murein transglycosylase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_16448_3
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(2520..3332)
DNA (813bp) protein (271aa)
oppC; oligopeptide ABC transporter membrane protein; K15582 oligopeptide transport system permease protein bin=bin1_lowGC species=Nitrospina sp. AB-629-B18 genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin1_lowGC organism_group=Unknown_CP
ABC-type transporter, integral membrane subunit
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_16448_4
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(3372..3743)
DNA (372bp) protein (124aa)
queF; NADPH-dependent 7-cyano-7-deazaguanine reductase (7-cyano-7-carbaguanine reductase) (PreQ(0) reductase) (NADPH-dependent nitrile oxidoreductase) (EC:1.7.1.13) bin=bin1_lowGC species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin1_lowGC organism_group=Unknown_CP
queF; NADPH-dependent 7-cyano-7-deazaguanine reductase (7-cyano-7-carbaguanine reductase) (PreQ(0) reductase) (NADPH-dependent nitrile oxidoreductase) (EC:1.7.1.13)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_16448_5
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(3767..3946)
DNA (180bp) protein (60aa)
id=14425646 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_16448_6
unknown

Not on your lists

comp(4018..4161)
DNA (144bp) protein (48aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_16448_trna_1
unknown

Not on your lists

4078..4148
DNA (71bp)
transferRNA Gln
PLM3_127_b2_sep16_scaffold_16448_7
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

4380..5255
DNA (876bp) protein (292aa)
Polysaccharide ABC transporter, permease protein bin=GWA2_Elusi_like_61_42 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=GWA2_Elusi_like_61_42 organism_group=Elusimicrobia organism_desc=Possibly not Elusi
ABC-2 type transporter
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3_127_b2_sep16_scaffold_16448_8
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

5227..6012
DNA (786bp) protein (262aa)
ABC transporter ATP binding protein Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YV45_METPS
ABC transporter ATP-binding protein
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3_127_b2_sep16_scaffold_16448_9
unknown

Not on your lists

6324..7292
DNA (969bp) protein (323aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_16448_10
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

7484..8257
DNA (774bp) protein (258aa)
Putative Fe-S oxidoreductase Tax=Desulfovibrio sp. U5L RepID=I2Q7J2_9DELT
radical SAM domain-containing protein
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM3_127_b2_sep16_scaffold_16448_11
unknown

Not on your lists

8666..9553
DNA (888bp) protein (296aa)

This feature has no annotations

Displaying 12 items

View Taxonomy