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PLM3_127_b2_sep16_scaffold_1255

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1255_trna_1
unknown

Not on your lists

58..129
DNA (72bp)
transferRNA Cys
PLM3_127_b2_sep16_scaffold_1255_1
unknown

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207..575
DNA (369bp) protein (123aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1255_trna_2
unknown

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878..963
DNA (86bp)
transferRNA Leu
PLM3_127_b2_sep16_scaffold_1255_2
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(1108..1281)
DNA (174bp) protein (58aa)
Probable ATP-dependent RNA helicase ddx56 Tax=Dictyostelium discoideum RepID=DDX56_DICDI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB15080.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
PLM3_127_b2_sep16_scaffold_1255_3
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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1447..2388
DNA (942bp) protein (314aa)
ApbE family lipoprotein bin=GWC2_Deltaproteobacteria_42_51 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
apbE; thiamine biosynthesis lipoprotein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1255_4
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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2511..3719
DNA (1209bp) protein (403aa)
GTP cyclohydrolase II (EC:3.5.4.25 4.1.2.-); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] bin=bin1_lowGC species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
GTP cyclohydrolase-2
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1255_5
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

3727..4209
DNA (483bp) protein (161aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] bin=bin1_lowGC species=Thermotoga thermarum genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=bin1_lowGC organism_group=Unknown_CP
ribH; 6,7-dimethyl-8-ribityllumazine synthase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1255_6
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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4220..4660
DNA (441bp) protein (147aa)
nusB; protein NusB; K03625 N utilization substance protein B bin=bin1_lowGC species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
nusB; transcription antitermination factor NusB
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1255_7
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

4662..5687
DNA (1026bp) protein (342aa)
anthranilate phosphoribosyltransferase; K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18] bin=bin1_lowGC species=Methanotorris igneus genus=Methanotorris taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=bin1_lowGC organism_group=Unknown_CP
trpD; anthranilate phosphoribosyltransferase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1255_8
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

5720..6502
DNA (783bp) protein (261aa)
indole-3-glycerol-phosphate synthase (EC:4.1.1.48); K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48] bin=bin1_lowGC species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin1_lowGC organism_group=Unknown_CP
trpC; indole-3-glycerol-phosphate synthase (EC:4.1.1.48)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1255_9
Methanobacterium paludis, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(6543..6962)
DNA (420bp) protein (140aa)
NUDIX hydrolase Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D507_METSW
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:AEG19286.1}; species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium paludis (strain DSM 25820 / JCM 18151 / SWAN1).;"
PLM3_127_b2_sep16_scaffold_1255_10
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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7096..7410
DNA (315bp) protein (105aa)
hypothetical protein bin=bin1_lowGC species=Amphibacillus jilinensis genus=Amphibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
binding-protein-dependent transporters inner membrane component
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1255_11
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(7489..8193)
DNA (705bp) protein (235aa)
obgE; GTPase ObgE; K03979 GTP-binding protein bin=bin1_lowGC species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
GTP-binding protein Obg/CgtA
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1255_12
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(8214..8495)
DNA (282bp) protein (94aa)
obgE; GTPase ObgE; K03979 GTP-binding protein bin=bin1_lowGC species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
spo0B-associated GTP-binding protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1255_13
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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8673..9137
DNA (465bp) protein (155aa)
putative Crp/Fnr family transcriptional regulator bin=bin1_lowGC species=unknown genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin1_lowGC organism_group=Unknown_CP
cyclic nucleotide-binding protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1255_14
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(9194..9619)
DNA (426bp) protein (142aa)
NifU family SUF system FeS assembly protein; K04488 nitrogen fixation protein NifU and related proteins bin=bin1_lowGC species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin1_lowGC organism_group=Unknown_CP
NifU family SUF system FeS assembly protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1255_15
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(9717..10562)
DNA (846bp) protein (282aa)
rhodanese-related sulfurtransferase bin=bin1_lowGC species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin1_lowGC organism_group=Unknown_CP
rhodanese-related sulfurtransferase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1255_16
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

10871..11338
DNA (468bp) protein (156aa)
hypothetical protein bin=bin1_lowGC species=Spirosoma panaciterrae genus=Spirosoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=bin1_lowGC organism_group=Unknown_CP
signal transduction protein with CBS domains
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1255_17
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

11683..11931
DNA (249bp) protein (83aa)
hypothetical protein bin=bin1_lowGC species=Desulfosporosinus meridiei genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1255_18
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(11938..15375)
DNA (3438bp) protein (1146aa)
dnaE2; DNA polymerase III subunit alpha (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7] bin=bin1_lowGC species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
dnaE2; DNA polymerase III subunit alpha (EC:2.7.7.7)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1255_19

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16169..16567
DNA (399bp) protein (133aa)
Ribonuclease VapC Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CQ83_DESK7
Marine sediment metagenome DNA, contig: S03H2_C01301 {ECO:0000313|EMBL:GAH30697.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
twitching motility protein PilT
PLM3_127_b2_sep16_scaffold_1255_20
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

16916..18259
DNA (1344bp) protein (448aa)
ftsY; cell division membrane protein; K03110 fused signal recognition particle receptor bin=bin1_lowGC species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
cell division protein FtsY
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1255_21
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

18320..19426
DNA (1107bp) protein (369aa)
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] bin=bin1_lowGC species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1255_22
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

19511..20191
DNA (681bp) protein (227aa)
nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] bin=bin1_lowGC species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
nicotinate/nicotinamide nucleotide adenylyltransferase (EC:2.7.7.18)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1255_23
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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20254..20541
DNA (288bp) protein (96aa)
iojap superfamily protein; K09710 ribosome-associated protein bin=bin1_lowGC species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
iojap family protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1255_24
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(20574..21638)
DNA (1065bp) protein (355aa)
cell division protein FtsZ; K03531 cell division protein FtsZ bin=bin1_lowGC species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
cell division protein FtsZ
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1255_25
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(21683..22912)
DNA (1230bp) protein (410aa)
ftsA; cell division protein FtsA; K03590 cell division protein FtsA bin=bin1_lowGC species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
ftsA; cell division protein FtsA
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1255_26
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(22939..23655)
DNA (717bp) protein (239aa)
cell division protein FtsQ; K03589 cell division protein FtsQ bin=bin1_lowGC species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
putative polypeptide-transport-associated domain protein FtsQ-type
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1255_27
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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comp(23652..24554)
DNA (903bp) protein (301aa)
murB; UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158); K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158] bin=bin1_lowGC species=unknown genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
murB; UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158)
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1255_28
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(24551..25918)
DNA (1368bp) protein (456aa)
UDP-N-acetylmuramate--L-alanine ligase; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] bin=bin1_lowGC species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
murC; UDP-N-acetylmuramate--L-alanine ligase
Tax=CSP1_2_Dadabacteria
Displaying items 1-30 of 73 in total

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