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PLM3_127_b2_sep16_scaffold_1954

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1954_1
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(2..3466)
DNA (3465bp) protein (1155aa)
hypothetical protein bin=bin1_lowGC species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1954_2
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(3570..4439)
DNA (870bp) protein (290aa)
lytic transglycosylase catalytic subunit bin=bin1_lowGC species=Methylomonas methanica genus=Methylomonas taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
lytic transglycosylase, catalytic
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1954_3
unknown

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4667..4852
DNA (186bp) protein (62aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1954_4

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comp(4880..5215)
DNA (336bp) protein (112aa)
Nitroreductase Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CKT1_PSEUX
Uncharacterized protein {ECO:0000313|EMBL:KKL72429.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
nitroreductase
PLM3_127_b2_sep16_scaffold_1954_5
RBG_16_Gammaproteobacteria_66_13_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5212..5568)
DNA (357bp) protein (119aa)
nitroreductase bin=bin1_lowGC species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin1_lowGC organism_group=Unknown_CP
nitroreductase
Tax=RBG_16_Gammaproteobacteria_66_13_curated
PLM3_127_b2_sep16_scaffold_1954_6
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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comp(5682..5954)
DNA (273bp) protein (91aa)
hypothetical protein Tax=Geopsychrobacter electrodiphilus RepID=UPI0003789205
hypothetical cytosolic protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1954_7
unknown

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6031..6285
DNA (255bp) protein (85aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1954_8
CSP1_5_NC10, NC10, Bacteria

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comp(6591..7214)
DNA (624bp) protein (208aa)
nitroreductase bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
nitroreductase
Tax=CSP1_5_NC10
PLM3_127_b2_sep16_scaffold_1954_9
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(7437..7733)
DNA (297bp) protein (99aa)
4Fe-4S ferredoxin bin=bin1_lowGC species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin1_lowGC organism_group=Unknown_CP
4Fe-4S ferredoxin
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1954_10
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(7822..8973)
DNA (1152bp) protein (384aa)
RNA polymerase, sigma 70 subunit, RpoD subfamily; K03086 RNA polymerase primary sigma factor bin=bin1_lowGC species=Oscillibacter sp. CAG:155 genus=Oscillibacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
rpoD; RNA polymerase sigma factor RpoD
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1954_11
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(9060..9677)
DNA (618bp) protein (206aa)
MarR family transcriptional regulator bin=bin1_lowGC species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
MarR family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1954_12
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(9773..10363)
DNA (591bp) protein (197aa)
(50S ribosomal protein L11P)-lysine N-methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-] bin=bin1_lowGC species=Clostridium colicanis genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
prmA; 50S ribosomal protein L11 methyltransferase (EC:2.1.1.-)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1954_13
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

10546..11802
DNA (1257bp) protein (419aa)
gdhA; glutamate dehydrogenase (EC:1.4.1.3); K00261 glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] bin=bin1_lowGC species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
gdhA; glutamate dehydrogenase (EC:1.4.1.3)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1954_14
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

11851..12651
DNA (801bp) protein (267aa)
phosphomethylpyrimidine kinase; K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] bin=bin1_lowGC species=Hydrogenobacter thermophilus genus=Hydrogenobacter taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin1_lowGC organism_group=Unknown_CP
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1954_15
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

12765..13613
DNA (849bp) protein (283aa)
folD; bifunctional 5,10 methylene-tetrahydrofolate dehydrogenase/cyclohydrolase (EC:1.5.1.5 3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] bin=bin1_lowGC species=Clostridium methylpentosum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
methenyltetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1954_16
unknown

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comp(13423..13809)
DNA (387bp) protein (129aa)

This feature has no annotations

Displaying 16 items

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