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PLM3_127_b2_sep16_scaffold_1987

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1987_1
Chloroherpeton thalassium, Chloroherpeton, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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comp(3..260)
DNA (258bp) protein (86aa)
Phosphoenolpyruvate carboxykinase [GTP] {ECO:0000256|HAMAP-Rule:MF_00452}; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00452};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00452};; EC=4.1.1.32 {ECO:0000256|HAMAP-Rule:MF_00452};; species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chloroherpeton.;" source="Chloroherpeton thalassium (strain ATCC 35110 / GB-78).;"
Phosphoenolpyruvate carboxykinase [GTP] Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QRQ0_CHLT3
phosphoenolpyruvate carboxykinase
PLM3_127_b2_sep16_scaffold_1987_2
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(447..755)
DNA (309bp) protein (103aa)
hypothetical protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1987_3
unknown

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comp(1167..1391)
DNA (225bp) protein (75aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1987_4
unknown

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comp(1407..1859)
DNA (453bp) protein (151aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1987_5
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(1929..2861)
DNA (933bp) protein (311aa)
radical SAM protein; K07139 bin=bin1_lowGC species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
radical SAM protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1987_6
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(2889..3623)
DNA (735bp) protein (245aa)
endonuclease III (EC:4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
endonuclease III (EC:4.2.99.18)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1987_7
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(3683..3946)
DNA (264bp) protein (88aa)
4Fe-4S ferredoxin bin=bin1_lowGC species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin1_lowGC organism_group=Unknown_CP
4Fe-4S ferredoxin
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1987_8
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(4071..4496)
DNA (426bp) protein (142aa)
protein translocase subunit secG bin=bin1_lowGC species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
secG; preprotein translocase subunit SecG
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1987_9
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(4503..5261)
DNA (759bp) protein (253aa)
triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
Triose-phosphate isomerase (EC:5.3.1.1)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1987_10
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(5709..6860)
DNA (1152bp) protein (384aa)
aspartate transaminase (EC:2.6.1.1) bin=bin1_lowGC species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
aspartate transaminase (EC:2.6.1.1)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1987_11
R_Acidobacteria_60_20, Acidobacteria, Bacteria

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7243..7437
DNA (195bp) protein (65aa)
50S ribosomal protein L28 Tax=Koribacter versatilis (strain Ellin345) RepID=RL28_KORVE
rpmB; 50S ribosomal protein L28
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
PLM3_127_b2_sep16_scaffold_1987_12
RLO_RIF03_38_15, RIF3, Bacteria

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comp(7422..7946)
DNA (525bp) protein (175aa)
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=DEF_THEYD
Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
PLM3_127_b2_sep16_scaffold_1987_13
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(8067..8354)
DNA (288bp) protein (96aa)
histone family protein DNA-binding protein; K05788 integration host factor subunit beta bin=bin1_lowGC species=Sphingopyxis baekryungensis genus=Sphingopyxis taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
DNA-binding protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1987_14
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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8608..9465
DNA (858bp) protein (286aa)
hypothetical protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=bin1_lowGC organism_group=Unknown_CP
TPR repeats containing protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1987_15
Gordonia alkanivorans, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(9537..10925)
DNA (1389bp) protein (463aa)
cmtF; trehalose corynomycolyl transferase (EC:2.3.1.122)
Putative uncharacterized protein Tax=Gordonia alkanivorans NBRC 16433 RepID=F9VYY2_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:GAA13821.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia alkanivorans NBRC 16433.;"
PLM3_127_b2_sep16_scaffold_1987_16
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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11183..11374
DNA (192bp) protein (64aa)
id=14426542 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1987_17
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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comp(11491..11703)
DNA (213bp) protein (71aa)
cold-shock protein Tax=Pseudomonas thermotolerans RepID=UPI00036482F8
cold-shock DNA-binding domain protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1987_18
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

11934..12884
DNA (951bp) protein (317aa)
chromosomal replication initiator DnaA domain-containing protein bin=bin1_lowGC species=Hippea maritima genus=Hippea taxon_order=Desulfurellales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
chromosomal replication initiator DnaA domain-containing protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1987_19
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(12785..13105)
DNA (321bp) protein (107aa)
Uncharacterized protein Tax=Melioribacter roseus (strain P3M) RepID=I6Z8F5_MELRP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFN75435.1}; species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" source="Melioribacter roseus (strain JCM 17771 / P3M-2).;"
PLM3_127_b2_sep16_scaffold_1987_20
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

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13447..13728
DNA (282bp) protein (94aa)
DNA methyltransferase Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI0003761C5C
N-6 DNA methylase
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM3_127_b2_sep16_scaffold_1987_21
GWC2_Nitrospirae_42_7_curated, Nitrospirae, Bacteria

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13771..14475
DNA (705bp) protein (235aa)
Uncharacterized protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
Tax=GWC2_Nitrospirae_42_7_curated
PLM3_127_b2_sep16_scaffold_1987_22
GWC2_Nitrospirae_42_7_curated, Nitrospirae, Bacteria

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14462..15220
DNA (759bp) protein (253aa)
Uncharacterized protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Tax=GWC2_Nitrospirae_42_7_curated
PLM3_127_b2_sep16_scaffold_1987_23
GWB1_OP11_44_11b, Gottesmanbacteria, Microgenomates, Bacteria

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comp(15601..16128)
DNA (528bp) protein (176aa)
Uncharacterized protein Tax=Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 RepID=K6VH25_ACIRA
Transposase-like protein {ECO:0000313|EMBL:KKT35952.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Gottesmanbacteria) bacterium GW2011_GWB1_44_11c.;"
putative insertion element transposase
PLM3_127_b2_sep16_scaffold_1987_24
unknown

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comp(16537..16710)
DNA (174bp) protein (58aa)

This feature has no annotations

Displaying 24 items

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