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PLM3_127_b2_sep16_scaffold_8129

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_8129_1
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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3..200
DNA (198bp) protein (66aa)
nuclease (SNase domain-containing protein) bin=bin1_lowGC species=Halanaerobium hydrogeniformans genus=Halanaerobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8129_2
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

197..847
DNA (651bp) protein (217aa)
16S rRNA m(7)G-527 methyltransferase (EC:2.1.1.-); K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] bin=bin1_lowGC species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
methyltransferase GidB
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8129_3
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

1208..1855
DNA (648bp) protein (216aa)
hypothetical protein bin=bin1_lowGC species=Hydrogenivirga sp. 128-5-R1-1 genus=Hydrogenivirga taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8129_4
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

1933..2790
DNA (858bp) protein (286aa)
methylthioadenosine phosphorylase (EC:2.4.2.28); K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] bin=bin1_lowGC species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
mtaP; methylthioadenosine phosphorylase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8129_5
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

2787..3689
DNA (903bp) protein (301aa)
ribokinase-like protein, subgroup C bin=bin1_lowGC species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
ribokinase-like domain-containing protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8129_6
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

3691..4446
DNA (756bp) protein (252aa)
TPR repeat-containing protein bin=bin1_lowGC species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8129_7
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

4475..4768
DNA (294bp) protein (98aa)
id=14425306 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8129_8
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(4815..6278)
DNA (1464bp) protein (488aa)
rfaE bifunctional protein; K03272 D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] bin=bin1_lowGC species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
cytochrome C biogenesis protein CcdA
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8129_9
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(6502..6798)
DNA (297bp) protein (99aa)
hypothetical protein bin=bin1_lowGC species=Thermodesulfobacterium geofontis genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8129_10
unknown

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comp(6991..7116)
DNA (126bp) protein (42aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_8129_11
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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comp(7113..7901)
DNA (789bp) protein (263aa)
DnaJ-class molecular chaperone with C-terminal Zn finger domain bin=GWC2_Deltaproteobacteria_42_51 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
molecular chaperone DnaJ
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_8129_12
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(8027..8941)
DNA (915bp) protein (305aa)
ATPase of the MinD/MRP superfamily (mrp-like)(ATP/GTP-binding protein) bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
mrp; Mrp protein, an chromosome partitioning ATPase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8129_13
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(8944..9348)
DNA (405bp) protein (135aa)
hypothetical protein bin=bin1_lowGC species=Thermoplasma acidophilum genus=Thermoplasma taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8129_14
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

9528..10592
DNA (1065bp) protein (355aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] bin=bin1_lowGC species=Clostridium sp. DL-VIII genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8129_15
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(10901..11371)
DNA (471bp) protein (157aa)
metal-binding protein bin=bin1_lowGC species=Thioflavicoccus mobilis genus=Thioflavicoccus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
conserved hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8129_16
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11533..11997)
DNA (465bp) protein (155aa)
Transferase hexapeptide repeat Tax=gamma proteobacterium HdN1 RepID=E1VLX7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CDH47598.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
transferase
PLM3_127_b2_sep16_scaffold_8129_17
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

12272..13327
DNA (1056bp) protein (352aa)
DNA repair photolyase bin=bin3_NC10 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin3_NC10 organism_group=NC10
DNA repair photolyase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_8129_18
uncultured Desulfofustis sp. PB-SRB1, Desulfofustis, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13347..13658)
DNA (312bp) protein (104aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfofustis; environmental samples.;" source="uncultured Desulfofustis sp. PB-SRB1.;"
Ribonuclease VapC Tax=uncultured Desulfofustis sp. PB-SRB1 RepID=V4KY32_9DELT
PilT protein domain-containing protein
PLM3_127_b2_sep16_scaffold_8129_19
unknown

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comp(14034..14210)
DNA (177bp) protein (59aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_8129_20
Pseudomonas cichorii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14250..14732)
DNA (483bp) protein (161aa)
hypothetical protein Tax=Variovorax paradoxus RepID=UPI0003808B35
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF67270.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas cichorii JBC1.;"
PLM3_127_b2_sep16_scaffold_8129_21
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists


15118..16836
DNA (1719bp) protein (573aa)
prolyl-tRNA synthetase; K01881 prolyl-tRNA synthetase [EC:6.1.1.15] bin=bin1_lowGC species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
prolyl-tRNA synthetase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8129_22
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17031..17753
DNA (723bp) protein (241aa)
Orotidine 5'-phosphate decarboxylase Tax=Geobacter sulfurreducens RepID=PYRF_GEOSL
orotidine 5'-phosphate decarboxylase
Tax=RBG_13_Deltaproteobacteria_53_10_curated
Displaying 22 items

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