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PLM3_127_b2_sep16_scaffold_2080

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2080_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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1..729
DNA (729bp) protein (243aa)
NADH dehydrogenase (EC:1.6.99.5)
NADH-ubiquinone oxidoreductase chain F Tax=Nitrosospira sp. APG3 RepID=M5DJW9_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_2080_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

740..3124
DNA (2385bp) protein (795aa)
NADH dehydrogenase subunit G (EC:1.6.5.3)
NADH-ubiquinone oxidoreductase chain G Tax=Nitrosospira sp. APG3 RepID=M5DUQ5_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_2080_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3121..4146
DNA (1026bp) protein (342aa)
NADH-quinone oxidoreductase subunit H bin=GWE2_Gallionellales_58_10 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
respiratory-chain NADH dehydrogenase subunit 1
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_2080_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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4157..4648
DNA (492bp) protein (164aa)
NADH-quinone oxidoreductase subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01351};; NADH dehydrogenase I subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; NDH-1 subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
NADH dehydrogenase subunit I (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit I Tax=Nitrosospira sp. APG3 RepID=M5DJZ8_9PROT
PLM3_127_b2_sep16_scaffold_2080_5
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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4705..5310
DNA (606bp) protein (202aa)
nuoJ; NADH dehydrogenase I subunit J (EC:1.6.5.3)
NADH:ubiquinone oxidoreductase subunit J Tax=Rhodocyclaceae RepID=UPI0003759821
NADH-quinone oxidoreductase subunit J {ECO:0000313|EMBL:EGK73226.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
PLM3_127_b2_sep16_scaffold_2080_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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5423..5728
DNA (306bp) protein (102aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456, ECO:0000313|EMBL:KIO48965.1}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
nuoK; NADH-quinone oxidoreductase subunit K (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit K Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=NUOK_NITEU
PLM3_127_b2_sep16_scaffold_2080_7
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

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5826..7787
DNA (1962bp) protein (654aa)
Proton-translocating NADH-quinone oxidoreductase, chain L Tax=Sulfuricella denitrificans skB26 RepID=S6A9V9_9PROT
nuoL; proton-translocating NADH-quinone oxidoreductase, chain L
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_2080_8
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7762..8880)
DNA (1119bp) protein (373aa)
hypothetical protein Tax=Burkholderia ubonensis RepID=UPI00016A321A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA50247.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (strain 1710b).;"
PLM3_127_b2_sep16_scaffold_2080_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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9423..10817
DNA (1395bp) protein (465aa)
NADH-quinone oxidoreductase subunit N Tax=Sulfuricella denitrificans skB26 RepID=S6B2A9_9PROT
proton-translocating NADH-quinone oxidoreductase, chain N
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_2080_10
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

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10814..11362
DNA (549bp) protein (183aa)
NUDIX hydrolase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6U6_NITMU
NUDIX hydrolase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_2080_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11378..13330)
DNA (1953bp) protein (651aa)
Diguanylate cyclase/phosphodiesterase Tax=Nitrosococcus oceani RepID=Q3JE85_NITOC
PAS sensor diguanylate cyclase/phosphodiesterase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_2080_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14535..16736
DNA (2202bp) protein (734aa)
aas; bifunctional Aas protein (EC:6.2.1.20)
Bifunctional Aas protein Tax=Azoarcus sp. (strain BH72) RepID=A1K1R3_AZOSB
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_2080_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16766..18679
DNA (1914bp) protein (638aa)
Chaperone protein HtpG Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=HTPG_NITMU
heat shock protein 90
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_2080_14
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(18710..19705)
DNA (996bp) protein (332aa)
putative hydrolase transmembrane protein bin=bin3_NC10 species=Herbaspirillum sp. JC206 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
putative hydrolase transmembrane protein
Tax=CSP1_5_NC10
PLM3_127_b2_sep16_scaffold_2080_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19948..20748)
DNA (801bp) protein (267aa)
Enoyl-CoA hydratase Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YZZ2_9RHOO
paaF2; enoyl-CoA hydratase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_2080_16
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20979..21188
DNA (210bp) protein (70aa)
Mg2+/Co2+ transporter Tax=Hylemonella gracilis ATCC 19624 RepID=F3KR03_9BURK
Mg2+/Co2+ transporter {ECO:0000313|EMBL:EGI77704.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
PLM3_127_b2_sep16_scaffold_2080_17
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21188..22303
DNA (1116bp) protein (372aa)
histidine kinase Tax=Thiobacillus thioparus RepID=UPI00035F2F6C
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_2080_18
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22544..24115
DNA (1572bp) protein (524aa)
amidase (EC:6.3.5.-)
Amidase Tax=Nitratireductor pacificus pht-3B RepID=K2MIL1_9RHIZ
Amidase {ECO:0000313|EMBL:EKF20545.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
PLM3_127_b2_sep16_scaffold_2080_19
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24134..25006
DNA (873bp) protein (291aa)
hypothetical protein Tax=Microbulbifer variabilis RepID=UPI00037524CE
Upregulator of flagellar master operon {ECO:0000313|EMBL:KJZ46608.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
PLM3_127_b2_sep16_scaffold_2080_20
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25056..25487
DNA (432bp) protein (144aa)
Uncharacterized protein Tax=Azospirillum brasilense Sp245 RepID=G8AEU0_AZOBR
cupin
Cupin {ECO:0000313|EMBL:AIB11069.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM3_127_b2_sep16_scaffold_2080_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25718..26470
DNA (753bp) protein (251aa)
hpcH; 2-dehydro-3-deoxyglucarate aldolase (EC:4.1.2.20)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI00035E8E2C
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_2080_22
R_NC10_66_22, NC10, Bacteria

Not on your lists

26562..27161
DNA (600bp) protein (200aa)
Uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_2080_23
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(27485..27778)
DNA (294bp) protein (98aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
plasmid pRiA4b ORF-3 family protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
Displaying 23 items

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