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PLM3_127_b2_sep16_scaffold_66

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_66_1
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3..233)
DNA (231bp) protein (77aa)
30S ribosomal protein S6 (Fragment) Tax=uncultured bacterium RepID=K2FIT2_9BACT
rpsF; 30S ribosomal protein S6
Tax=GWA2_Gallionellales_60_18_curated
PLM3_127_b2_sep16_scaffold_66_2
Alcanivorax hongdengensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

464..2230
DNA (1767bp) protein (589aa)
hypothetical protein Tax=Nevskia ramosa RepID=UPI0003B363D7
Uncharacterized protein {ECO:0000313|EMBL:EKF74730.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax hongdengensis A-11-3.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_66_3
Hydrogenivirga sp. 128-5-R1-1, Hydrogenivirga, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

2492..3088
DNA (597bp) protein (199aa)
Uncharacterized protein Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8US41_9AQUI
Uncharacterized protein {ECO:0000313|EMBL:EDP76019.1}; species="Bacteria; Aquificae; Aquificales; Aquificaceae; Hydrogenivirga.;" source="Hydrogenivirga sp. 128-5-R1-1.;"
norC; nitric oxide reductase cytochrome c subunit
PLM3_127_b2_sep16_scaffold_66_4
Thermus oshimai, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

3098..4507
DNA (1410bp) protein (470aa)
hypothetical protein Tax=Verrucomicrobium sp. 3C RepID=UPI000372FEBF
nitric oxide reductase large subunit
Nitric oxide reductase large subunit {ECO:0000313|EMBL:AFV76106.1}; Flags: Precursor;; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus oshimai JL-2.;"
PLM3_127_b2_sep16_scaffold_66_5
unknown

Not on your lists

4504..4800
DNA (297bp) protein (99aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_66_6
unknown

Not on your lists

4797..5144
DNA (348bp) protein (116aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_66_7
Chroococcidiopsis thermalis, Chroococcidiopsis, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

comp(5387..6211)
DNA (825bp) protein (275aa)
Uncharacterized protein Tax=Chroococcidiopsis thermalis PCC 7203 RepID=K9U3L1_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY89405.1}; species="Bacteria; Cyanobacteria; Pleurocapsales; Chroococcidiopsis.;" source="Chroococcidiopsis thermalis PCC 7203.;"
PLM3_127_b2_sep16_scaffold_66_8
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(6218..7159)
DNA (942bp) protein (314aa)
garL; 2-dehydro-3-deoxyglucarate aldolase (EC:4.1.2.20)
2-dehydro-3-deoxyglucarate aldolase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACY6_GEMAT
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_66_9
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(7210..9510)
DNA (2301bp) protein (767aa)
penicillin-binding protein 1C (EC:2.4.1.129); K05367 penicillin-binding protein 1C [EC:2.4.1.-] bin=bin1_lowGC species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
penicillin-binding protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_66_10
R_Deltaproteobacteria_42_39, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9577..15429)
DNA (5853bp) protein (1951aa)
hypothetical protein Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00037F5E28
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_42_39_curated
PLM3_127_b2_sep16_scaffold_66_11
unknown

Not on your lists

comp(15830..16249)
DNA (420bp) protein (140aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_66_12
Oscillatoria nigro-viridis, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(16246..16833)
DNA (588bp) protein (196aa)
FMN reductase Tax=Oscillatoria sp. PCC 10802 RepID=UPI00034C4984
NADPH-dependent FMN reductase
NADPH-dependent FMN reductase {ECO:0000313|EMBL:AFZ07055.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria nigro-viridis PCC 7112.;"
PLM3_127_b2_sep16_scaffold_66_13
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17152..18897)
DNA (1746bp) protein (582aa)
Cyclic di-GMP phosphodiesterase Gmr {ECO:0000313|EMBL:GAO32517.1}; EC=3.1.4.52 {ECO:0000313|EMBL:GAO32517.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
Sensor diguanylate cyclase/phosphodiesterase, PAS and PAS domain-containing Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AF25_GEOSK
sensor diguanylate cyclase/phosphodiesterase, PAS and PAS domain-containing
PLM3_127_b2_sep16_scaffold_66_14
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19627..20550
DNA (924bp) protein (308aa)
ROK family protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CSR8_SIDLE
ROK family protein
ROK family protein {ECO:0000313|EMBL:ADE12004.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
PLM3_127_b2_sep16_scaffold_66_15
Thauera sp. MZ1T, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20691..22559)
DNA (1869bp) protein (623aa)
FAD-dependent cmnm(5)s(2)U34 oxidoreductase Tax=Azoarcus toluclasticus RepID=UPI00036D7AC4
mnmC; 5-methylaminomethyl-2-thiouridine methyltransferase
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC {ECO:0000256|HAMAP-Rule:MF_01102, ECO:0000256|SAAS:SAAS00084295}; Short=tRNA mnm(5)s(2)U biosynthesis bifunctional protein {ECO:0000256|HAMAP-Rule:MF_01102};; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. (strain MZ1T).;"
PLM3_127_b2_sep16_scaffold_66_16
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22702..23661
DNA (960bp) protein (320aa)
Uncharacterized protein UPF0065 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q121U5_POLSJ
hypothetical protein
Uncharacterized protein UPF0065 {ECO:0000313|EMBL:ABE46697.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
PLM3_127_b2_sep16_scaffold_66_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23740..25236
DNA (1497bp) protein (499aa)
dan; D-aminoacylase Dan (EC:3.5.1.81)
D-aminoacylase Dan {ECO:0000313|EMBL:AGU52814.1}; EC=3.5.1.81 {ECO:0000313|EMBL:AGU52814.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
D-aminoacylase Dan Tax=Variovorax paradoxus B4 RepID=T1XKH8_VARPD
PLM3_127_b2_sep16_scaffold_66_18
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25366..26304
DNA (939bp) protein (313aa)
Phosphoesterase Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IFA6_ANADE
phosphoesterase
Phosphoesterase {ECO:0000313|EMBL:ABC83267.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-C).;"
PLM3_127_b2_sep16_scaffold_66_19
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26791..27489)
DNA (699bp) protein (233aa)
Manganese/iron superoxide dismutase (EC:1.15.1.1)
Superoxide dismutase Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VDA1_9CYAN
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_66_20
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27677..28111
DNA (435bp) protein (145aa)
Thioredoxin Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4KYM5_9GAMM
thioredoxin
Tax=GWA2_Curvibacter_64_110_curated
PLM3_127_b2_sep16_scaffold_66_21
unknown

Not on your lists

comp(28216..28347)
DNA (132bp) protein (44aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_66_22
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28568..30439
DNA (1872bp) protein (624aa)
Uncharacterized protein Tax=Polaromonas sp. CF318 RepID=J2LGX9_9BURK
AsmA
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
PLM3_127_b2_sep16_scaffold_66_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30756..31379)
DNA (624bp) protein (208aa)
gshA2; glutamate--cysteine ligase GshA (EC:6.3.2.2)
Glutamate--cysteine ligase Tax=Variovorax sp. CF313 RepID=J3CMQ1_9BURK
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_66_24
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31504..32979)
DNA (1476bp) protein (492aa)
cardiolipin synthetase 2 (EC:2.7.8.-)
Phospholipase D/Transphosphatidylase bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RBG_16_Gallionellales_56_9_curated
PLM3_127_b2_sep16_scaffold_66_25
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32979..33743)
DNA (765bp) protein (255aa)
Crp/Fnr family transcriptional regulator
Putative transcriptional regulator, Crp/Fnr family bin=GWB1_Spirochaetes_59_5 species=unknown genus=Methylotenera taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Tax=RBG_16_Gamma2_65_34_curated
PLM3_127_b2_sep16_scaffold_66_26
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33864..34688)
DNA (825bp) protein (275aa)
Putative PAS/PAC sensor protein Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GLI1_NITSI
histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM3_127_b2_sep16_scaffold_66_27
R_Gallionellales_60_31, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34685..36739)
DNA (2055bp) protein (685aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.3.-)
PAS/PAC sensor hybrid histidine kinase Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AY1_POLSJ
Tax=RIFCSPLOWO2_02_Gallionellales_60_31_curated
PLM3_127_b2_sep16_scaffold_66_28
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36874..37023)
DNA (150bp) protein (50aa)
hypothetical protein bin=GWF1_Burkholderiales_GWF1_66_17 species=Oxalobacteraceae bacterium IMCC9480 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Mg/Co/Ni transporter MgtE
Tax=GWE1_Burkholderiales_65_30_curated
PLM3_127_b2_sep16_scaffold_66_29
unknown

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comp(37362..37562)
DNA (201bp) protein (67aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_66_30
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37835..38599)
DNA (765bp) protein (255aa)
Transcriptional regulator-like protein Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GN68_CUPNN
transcriptional regulator-like protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
Displaying items 1-30 of 73 in total

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