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PLM3_127_b2_sep16_scaffold_1229

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1229_1
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..848
DNA (846bp) protein (282aa)
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA Tax=Ralstonia pickettii OR214 RepID=R0CHS0_RALPI
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1229_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1373..2113
DNA (741bp) protein (247aa)
Uncharacterized protein Tax=Sorangium cellulosum So0157-2 RepID=S4XQB6_SORCE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM3_127_b2_sep16_scaffold_1229_3
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2128..2964
DNA (837bp) protein (279aa)
Phosphate ABC transporter substrate-binding protein, PhoT family Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12D09_POLSJ
phosphate transport system substrate-binding protein
Phosphate ABC transporter substrate-binding protein, PhoT family {ECO:0000313|EMBL:ABE43583.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
PLM3_127_b2_sep16_scaffold_1229_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2988..3605)
DNA (618bp) protein (206aa)
Glutathione S-transferase domain-containing protein Tax=beta proteobacterium CB RepID=M1SQQ1_9PROT
glutathione S-transferase domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1229_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3618..4202)
DNA (585bp) protein (195aa)
hypothetical protein bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
uracil-DNA glycosylase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1229_6
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4223..5587
DNA (1365bp) protein (455aa)
Putative adenylosuccinate lyase Tax=uncultured prokaryote AT3 RepID=D3W8E5_9ZZZZ
adenylosuccinate lyase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1229_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5584..7587
DNA (2004bp) protein (668aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI0002ED447C
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1229_8
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7588..8535)
DNA (948bp) protein (316aa)
Protein-export membrane protein SecF Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJX7_AZOSU
protein-export membrane protein, SecD/SecF family
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_1229_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8541..10379)
DNA (1839bp) protein (613aa)
preprotein translocase subunit SecD Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI00038292B1
protein-export membrane protein, SecD/SecF family
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1229_10
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10380..10700)
DNA (321bp) protein (107aa)
Preprotein translocase, YajC subunit Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJX5_AZOSU
preprotein translocase subunit YajC
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_1229_11
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10700..11821)
DNA (1122bp) protein (374aa)
queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CQ33_SIDLE
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1229_12
unknown

Not on your lists

11857..12684
DNA (828bp) protein (276aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1229_13
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12650..13663)
DNA (1014bp) protein (338aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase Tax=Sulfuricella denitrificans skB26 RepID=S6B682_9PROT
queA; s-adenosylmethionine/tRNA-ribosyltransferase-isomerase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1229_trna_1
unknown

Not on your lists

13709..13792
DNA (84bp)
transferRNA Leu
PLM3_127_b2_sep16_scaffold_1229_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13896..14411
DNA (516bp) protein (172aa)
hypothetical protein Tax=Methylotenera sp. 1P/1 RepID=UPI0003825885
response regulator receiver modulated metal dependent phosphohydrolase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1229_15
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14408..16924
DNA (2517bp) protein (839aa)
Hpt sensor hybrid histidine kinase (EC:2.7.13.3)
Hpt sensor hybrid histidine kinase bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1229_16
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16978..17808
DNA (831bp) protein (277aa)
hypothetical protein Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003694304
alpha/beta hydrolase
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM3_127_b2_sep16_scaffold_1229_17
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17810..18763)
DNA (954bp) protein (318aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI000378C967
Enoyl-CoA hydratase/isomerase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1229_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18957..19193
DNA (237bp) protein (79aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1229_19
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19111..19818)
DNA (708bp) protein (236aa)
panC; pantoate--beta-alanine ligase (EC:6.3.2.1)
Pantothenate synthetase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=PANC_NITMU
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1229_20
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19818..20450)
DNA (633bp) protein (211aa)
dgk; deoxyguanosine kinase (EC:2.7.1.113)
Deoxyadenosine kinase Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1W3V4_9BURK
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1229_21
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20443..20823)
DNA (381bp) protein (127aa)
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (EC:2.7.6.3)
7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Tax=Laribacter hongkongensis (strain HLHK9) RepID=C1D7E7_LARHH
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1229_22
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20820..22094)
DNA (1275bp) protein (425aa)
pcnB; poly(A) polymerase (EC:2.7.7.19)
Poly(A) polymerase I Tax=Thauera sp. 28 RepID=N6YT38_9RHOO
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1229_23
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22109..22774)
DNA (666bp) protein (222aa)
phosphoserine phosphatase Tax=Thiobacillus denitrificans RepID=UPI0003663FAA
HAD family hydrolase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1229_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22787..23203)
DNA (417bp) protein (139aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1229_25
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23282..23893)
DNA (612bp) protein (204aa)
Sigma 54 interacting domain protein Tax=Methylovorus sp. (strain MP688) RepID=E4QQ60_METS6
sigma 54 interacting domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1229_26
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23893..24951)
DNA (1059bp) protein (353aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6AD48_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_1229_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24971..25969
DNA (999bp) protein (333aa)
phosphoribosylaminoimidazole synthetase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=PUR5_CUPPJ
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1229_28
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25993..26457)
DNA (465bp) protein (155aa)
elongation factor Tu, domain 2 (EC:3.4.-.-)
NAD-dependent DNA ligase LigA bin=GWC2_Nitrospirae_57_13 species=uncultured organism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_1229_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26530..29970
DNA (3441bp) protein (1147aa)
DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III, alpha subunit Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5F3_NITMU
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Displaying items 1-30 of 33 in total

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