ggKbase home page

PLM3_127_b2_sep16_scaffold_2404

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2404_1
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1236
-----------------
DNA (1236bp)
protein (412aa)
Uncharacterized protein Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SF47_METPP
hypothetical protein
Tax=RBG_16_Gamma2_60_9_curated
PLM3_127_b2_sep16_scaffold_2404_2
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1233..2060
-----------------
DNA (828bp)
protein (276aa)
Putative uncharacterized protein Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WHZ1_9BURK
hypothetical protein
Tax=RBG_16_Gamma2_60_9_curated
PLM3_127_b2_sep16_scaffold_2404_3
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2142..3986
-----------------
DNA (1845bp)
protein (615aa)
Uncharacterized protein Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SF48_METPP
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_2404_4
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3973..4620
-----------------
DNA (648bp)
protein (216aa)
Uncharacterized protein Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SF49_METPP
hypothetical protein
Tax=RBG_16_Gamma2_60_9_curated
PLM3_127_b2_sep16_scaffold_2404_5
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4617..5084
-----------------
DNA (468bp)
protein (156aa)
Uncharacterized protein Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SF50_METPP
hypothetical protein
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
PLM3_127_b2_sep16_scaffold_2404_6
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5469..5750
-----------------
DNA (282bp)
protein (94aa)
MotA/TolQ/ExbB proton channel Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GLB8_THISH
MotA/TolQ/ExbB proton channel
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
PLM3_127_b2_sep16_scaffold_2404_7
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5778..6284
-----------------
DNA (507bp)
protein (169aa)
Biopolymer transport protein ExbD/TolR Tax=Geobacter sp. (strain M21) RepID=C6DZ22_GEOSM
biopolymertransporter ExbD/TolR
Tax=RBG_16_Gamma2_60_9_curated
PLM3_127_b2_sep16_scaffold_2404_8
endosymbiont of Tevnia jerichonana, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6281..6802
-----------------
DNA (522bp)
protein (174aa)
Putative uncharacterized protein Tax=sulfur-oxidizing symbionts RepID=G2DE97_9GAMM
Putative biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:EGW53773.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Tevnia jerichonana (vent Tica).;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2404_9
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6821..7723
-----------------
DNA (903bp)
protein (301aa)
TonB family C-terminal domain-containing protein Tax=Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 / SA1) RepID=K4L080_SIMAS
TonB family C-terminal domain-containing protein
Tax=RBG_16_Gamma2_60_9_curated
PLM3_127_b2_sep16_scaffold_2404_10
unknown

Not on your lists

7805..8164
-----------------
DNA (360bp)
protein (120aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2404_11
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8165..9478)
-----------------
DNA (1314bp)
protein (438aa)
3-hydroxyphenylpropionic acid Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TT65_TISMK
pcaK; 3-hydroxyphenylpropionic acid
3-hydroxyphenylpropionic acid {ECO:0000313|EMBL:AFK55953.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
PLM3_127_b2_sep16_scaffold_2404_12
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9491..9877)
-----------------
DNA (387bp)
protein (129aa)
Uncharacterized protein Tax=alpha proteobacterium BAL199 RepID=A8TML8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP65816.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2404_13
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9874..10134)
-----------------
DNA (261bp)
protein (87aa)
Uncharacterized protein Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FA07_DESAA
Uncharacterized protein {ECO:0000313|EMBL:CDX12451.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2404_14
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10316..13033
-----------------
DNA (2718bp)
protein (906aa)
Phosphoenolpyruvate carboxylase bin=GWF1_Xanthomonadales_69_6 species=Hydrocarboniphaga effusa genus=Hydrocarboniphaga taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
ppc; phosphoenolpyruvate carboxylase
Tax=CG_Delta_07
PLM3_127_b2_sep16_scaffold_2404_15
unknown

Not on your lists

13343..13540
-----------------
DNA (198bp)
protein (66aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2404_16
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13545..14600)
-----------------
DNA (1056bp)
protein (352aa)
hypothetical protein Tax=Kordiimonas gwangyangensis RepID=UPI00035D35BE
RND family efflux transporter MFP subunit
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM3_127_b2_sep16_scaffold_2404_17
Simiduia agarivorans, Simiduia, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14719..17826)
-----------------
DNA (3108bp)
protein (1036aa)
AcrB/AcrD/AcrF family protein Tax=Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 / SA1) RepID=K4KL50_SIMAS
AcrB/AcrD/AcrF family protein {ECO:0000313|EMBL:AFU99731.2}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Simiduia.;" source="Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 /; SA1).;"
AcrB/AcrD/AcrF family protein
Displaying 17 items

View Taxonomy