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PLM3_127_b2_sep16_scaffold_2469

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2469_1

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comp(2..520)
-----------------
DNA (519bp)
protein (173aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM01543.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3_127_b2_sep16_scaffold_2469_2

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comp(673..2187)
-----------------
DNA (1515bp)
protein (505aa)
Histidine ammonia-lyase {ECO:0000313|EMBL:EQD52025.1}; EC=4.3.1.3 {ECO:0000313|EMBL:EQD52025.1};; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Histidine ammonia-lyase Tax=mine drainage metagenome RepID=T1BCS4_9ZZZZ
histidine ammonia-lyase
PLM3_127_b2_sep16_scaffold_2469_3
R_Gammaproteobacteria_45_9, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2184..3329)
-----------------
DNA (1146bp)
protein (382aa)
imidazolonepropionase (EC:3.5.2.7)
imidazolonepropionase Tax=Rhizobium giardinii RepID=UPI00037818FA
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_45_9_curated
PLM3_127_b2_sep16_scaffold_2469_4

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3402..4745
-----------------
DNA (1344bp)
protein (448aa)
N-formimino-L-glutamate deiminase Tax=mine drainage metagenome RepID=T0ZUU0_9ZZZZ
N-formimino-L-glutamate deiminase {ECO:0000313|EMBL:EQD52026.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
formiminoglutamate deiminase
PLM3_127_b2_sep16_scaffold_2469_5

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4763..5563
-----------------
DNA (801bp)
protein (267aa)
N-formylglutamate deformylase Tax=mine drainage metagenome RepID=T1A537_9ZZZZ
N-formylglutamate deformylase {ECO:0000313|EMBL:EQD52028.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
N-formylglutamate amidohydrolase
PLM3_127_b2_sep16_scaffold_2469_6
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5568..7238)
-----------------
DNA (1671bp)
protein (557aa)
ABC transporter related protein Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C150_NITHN
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADE14607.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
PLM3_127_b2_sep16_scaffold_2469_7
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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7341..9500
-----------------
DNA (2160bp)
protein (720aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase Tax=Nitrococcus mobilis Nb-231 RepID=A4BNJ5_9GAMM
PLM3_127_b2_sep16_scaffold_2469_8

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9529..10041
-----------------
DNA (513bp)
protein (171aa)
Ribonucleotide reductase regulator NrdR-like protein Tax=mine drainage metagenome RepID=T1CBW7_9ZZZZ
Ribonucleotide reductase regulator NrdR-like protein {ECO:0000313|EMBL:EQD79762.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
transcriptional regulator
PLM3_127_b2_sep16_scaffold_2469_9
GWF2_Sideroxydans_59_14_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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10045..11175
-----------------
DNA (1131bp)
protein (377aa)
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CNH9_SIDLE
Tax=GWF2_Sideroxydans_59_14_curated
PLM3_127_b2_sep16_scaffold_2469_10
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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11139..11735
-----------------
DNA (597bp)
protein (199aa)
riboflavin synthase subunit alpha (EC:2.5.1.9)
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:ADC62699.1}; EC=2.5.1.9 {ECO:0000313|EMBL:ADC62699.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
Riboflavin synthase, alpha subunit Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RU40_ALLVD
PLM3_127_b2_sep16_scaffold_2469_11
Salinisphaera shabanensis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

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11732..12832
-----------------
DNA (1101bp)
protein (367aa)
Bifunctional 34-dihydroxy-2-butanone 4-phosphate synthase-GTP cyclohydrolase II RibBA protein {ECO:0000313|EMBL:ERJ18301.1}; EC=4.1.99.12 {ECO:0000313|EMBL:ERJ18301.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera shabanensis E1L3A.;"
GTP cyclohydrolase II (EC:3.5.4.25)
3,4-dihydroxy-2-butanone 4-phosphate synthase Tax=Singularimonas variicoloris RepID=UPI00035F1BBF
PLM3_127_b2_sep16_scaffold_2469_12
endosymbiont of Tevnia jerichonana, Gammaproteobacteria, Proteobacteria, Bacteria

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12851..13327
-----------------
DNA (477bp)
protein (159aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Tevnia jerichonana (vent Tica).;"
6,7-dimethyl-8-ribityllumazine synthase Tax=sulfur-oxidizing symbionts RepID=G2DBX1_9GAMM
6,7-dimethyl-8-ribityllumazine synthase
PLM3_127_b2_sep16_scaffold_2469_13

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13342..13800
-----------------
DNA (459bp)
protein (153aa)
NusB antitermination factor Tax=mine drainage metagenome RepID=T1C1N0_9ZZZZ
NusB antitermination factor {ECO:0000313|EMBL:EQD59184.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
nusB; transcription antitermination factor NusB
PLM3_127_b2_sep16_scaffold_2469_14
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13818..14789
-----------------
DNA (972bp)
protein (324aa)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
Thiamine-monophosphate kinase Tax=Hydrocarboniphaga effusa AP103 RepID=I8T700_9GAMM
thiamine-monophosphate kinase
PLM3_127_b2_sep16_scaffold_2469_15
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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14907..16292
-----------------
DNA (1386bp)
protein (462aa)
Serine/threonine-protein kinase Tax=mine drainage metagenome RepID=T1A6R0_9ZZZZ
cyclic nucleotide-binding protein
Tax=RBG_16_Gammaproteobacteria_51_14_curated
PLM3_127_b2_sep16_scaffold_2469_16
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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16536..17342
-----------------
DNA (807bp)
protein (269aa)
hypothetical protein Tax=Sinorhizobium medicae RepID=UPI00036D2A5B
Uncharacterized protein {ECO:0000313|EMBL:AKC85890.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2469_17
endosymbiont of unidentified scaly snail isolate Monju, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17388..18218)
-----------------
DNA (831bp)
protein (277aa)
GTP cyclohydrolase FolE2 {ECO:0000256|HAMAP-Rule:MF_01527}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_01527};; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="endosymbiont of unidentified scaly snail isolate Monju.;"
GTP cyclohydrolase FolE2 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BDI3_9GAMM
hypothetical protein
PLM3_127_b2_sep16_scaffold_2469_18
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18311..20209)
-----------------
DNA (1899bp)
protein (633aa)
1-deoxy-D-xylulose-5-phosphate synthase Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K5W3_NITWC
deoxyxylulose-5-phosphate synthase
Tax=RBG_16_Gamma2_65_34_curated
PLM3_127_b2_sep16_scaffold_2469_19
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20224..20628)
-----------------
DNA (405bp)
protein (135aa)
farnesyl-diphosphate synthase Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI0003624424
farnesyl-diphosphate synthase
Tax=RBG_16_Gammaproteobacteria_57_12_curated
Displaying 19 items

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