| name | lists | location/seqs | annotations | notes |
|---|---|---|---|---|
| PLM3_127_b2_sep16_scaffold_2469_1 |
Not on your lists |
comp(2..520)
----------------- DNA (519bp) protein (173aa) |
Uncharacterized protein {ECO:0000313|EMBL:KKM01543.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
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| PLM3_127_b2_sep16_scaffold_2469_2 |
Not on your lists |
comp(673..2187)
----------------- DNA (1515bp) protein (505aa) |
Histidine ammonia-lyase {ECO:0000313|EMBL:EQD52025.1}; EC=4.3.1.3 {ECO:0000313|EMBL:EQD52025.1};; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Histidine ammonia-lyase Tax=mine drainage metagenome RepID=T1BCS4_9ZZZZ
histidine ammonia-lyase
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PLM3_127_b2_sep16_scaffold_2469_3
R_Gammaproteobacteria_45_9, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2184..3329)
----------------- DNA (1146bp) protein (382aa) |
imidazolonepropionase (EC:3.5.2.7)
imidazolonepropionase Tax=Rhizobium giardinii RepID=UPI00037818FA
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_45_9_curated
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| PLM3_127_b2_sep16_scaffold_2469_4 |
Not on your lists |
3402..4745
----------------- DNA (1344bp) protein (448aa) |
N-formimino-L-glutamate deiminase Tax=mine drainage metagenome RepID=T0ZUU0_9ZZZZ
N-formimino-L-glutamate deiminase {ECO:0000313|EMBL:EQD52026.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
formiminoglutamate deiminase
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| PLM3_127_b2_sep16_scaffold_2469_5 |
Not on your lists |
4763..5563
----------------- DNA (801bp) protein (267aa) |
N-formylglutamate deformylase Tax=mine drainage metagenome RepID=T1A537_9ZZZZ
N-formylglutamate deformylase {ECO:0000313|EMBL:EQD52028.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
N-formylglutamate amidohydrolase
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PLM3_127_b2_sep16_scaffold_2469_6
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5568..7238)
----------------- DNA (1671bp) protein (557aa) |
ABC transporter related protein Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C150_NITHN
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADE14607.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
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PLM3_127_b2_sep16_scaffold_2469_7
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7341..9500
----------------- DNA (2160bp) protein (720aa) |
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase Tax=Nitrococcus mobilis Nb-231 RepID=A4BNJ5_9GAMM
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| PLM3_127_b2_sep16_scaffold_2469_8 |
Not on your lists |
9529..10041
----------------- DNA (513bp) protein (171aa) |
Ribonucleotide reductase regulator NrdR-like protein Tax=mine drainage metagenome RepID=T1CBW7_9ZZZZ
Ribonucleotide reductase regulator NrdR-like protein {ECO:0000313|EMBL:EQD79762.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
transcriptional regulator
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PLM3_127_b2_sep16_scaffold_2469_9
GWF2_Sideroxydans_59_14_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10045..11175
----------------- DNA (1131bp) protein (377aa) |
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CNH9_SIDLE
Tax=GWF2_Sideroxydans_59_14_curated
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PLM3_127_b2_sep16_scaffold_2469_10
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11139..11735
----------------- DNA (597bp) protein (199aa) |
riboflavin synthase subunit alpha (EC:2.5.1.9)
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:ADC62699.1}; EC=2.5.1.9 {ECO:0000313|EMBL:ADC62699.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
Riboflavin synthase, alpha subunit Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RU40_ALLVD
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PLM3_127_b2_sep16_scaffold_2469_11
Salinisphaera shabanensis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11732..12832
----------------- DNA (1101bp) protein (367aa) |
Bifunctional 34-dihydroxy-2-butanone 4-phosphate synthase-GTP cyclohydrolase II RibBA protein {ECO:0000313|EMBL:ERJ18301.1}; EC=4.1.99.12 {ECO:0000313|EMBL:ERJ18301.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera shabanensis E1L3A.;"
GTP cyclohydrolase II (EC:3.5.4.25)
3,4-dihydroxy-2-butanone 4-phosphate synthase Tax=Singularimonas variicoloris RepID=UPI00035F1BBF
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PLM3_127_b2_sep16_scaffold_2469_12
endosymbiont of Tevnia jerichonana, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12851..13327
----------------- DNA (477bp) protein (159aa) |
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Tevnia jerichonana (vent Tica).;"
6,7-dimethyl-8-ribityllumazine synthase Tax=sulfur-oxidizing symbionts RepID=G2DBX1_9GAMM
6,7-dimethyl-8-ribityllumazine synthase
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| PLM3_127_b2_sep16_scaffold_2469_13 |
Not on your lists |
13342..13800
----------------- DNA (459bp) protein (153aa) |
NusB antitermination factor Tax=mine drainage metagenome RepID=T1C1N0_9ZZZZ
NusB antitermination factor {ECO:0000313|EMBL:EQD59184.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
nusB; transcription antitermination factor NusB
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PLM3_127_b2_sep16_scaffold_2469_14
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13818..14789
----------------- DNA (972bp) protein (324aa) |
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
Thiamine-monophosphate kinase Tax=Hydrocarboniphaga effusa AP103 RepID=I8T700_9GAMM
thiamine-monophosphate kinase
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PLM3_127_b2_sep16_scaffold_2469_15
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14907..16292
----------------- DNA (1386bp) protein (462aa) |
Serine/threonine-protein kinase Tax=mine drainage metagenome RepID=T1A6R0_9ZZZZ
cyclic nucleotide-binding protein
Tax=RBG_16_Gammaproteobacteria_51_14_curated
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PLM3_127_b2_sep16_scaffold_2469_16
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16536..17342
----------------- DNA (807bp) protein (269aa) |
hypothetical protein Tax=Sinorhizobium medicae RepID=UPI00036D2A5B
Uncharacterized protein {ECO:0000313|EMBL:AKC85890.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein
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PLM3_127_b2_sep16_scaffold_2469_17
endosymbiont of unidentified scaly snail isolate Monju, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17388..18218)
----------------- DNA (831bp) protein (277aa) |
GTP cyclohydrolase FolE2 {ECO:0000256|HAMAP-Rule:MF_01527}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_01527};; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="endosymbiont of unidentified scaly snail isolate Monju.;"
GTP cyclohydrolase FolE2 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BDI3_9GAMM
hypothetical protein
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PLM3_127_b2_sep16_scaffold_2469_18
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18311..20209)
----------------- DNA (1899bp) protein (633aa) |
1-deoxy-D-xylulose-5-phosphate synthase Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K5W3_NITWC
deoxyxylulose-5-phosphate synthase
Tax=RBG_16_Gamma2_65_34_curated
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PLM3_127_b2_sep16_scaffold_2469_19
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20224..20628)
----------------- DNA (405bp) protein (135aa) |
farnesyl-diphosphate synthase Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI0003624424
farnesyl-diphosphate synthase
Tax=RBG_16_Gammaproteobacteria_57_12_curated
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