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PLM3_127_b2_sep16_scaffold_3252

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_3252_1
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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143..1453
-----------------
DNA (1311bp)
protein (437aa)
Two component transpcriptional regulator, fis family protein Tax=Nitrococcus mobilis Nb-231 RepID=A4BPD3_9GAMM
Two component transpcriptional regulator, fis family protein {ECO:0000313|EMBL:EAR22434.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
yfhA; NtrC family response regulator
PLM3_127_b2_sep16_scaffold_3252_2

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comp(1561..2025)
-----------------
DNA (465bp)
protein (155aa)
Fibronectin type III domain protein Tax=uncultured bacterium ws198A12 RepID=I1X5J4_9BACT
Fibronectin type III domain protein {ECO:0000313|EMBL:AFI78769.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium ws198A12.;"
Ig family protein
PLM3_127_b2_sep16_scaffold_3252_3
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2539..3894)
-----------------
DNA (1356bp)
protein (452aa)
Putative PEP-CTERM system response regulator Tax=uncultured bacterium CSLC3 RepID=G4WVT8_9BACT
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:BAP87988.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
PLM3_127_b2_sep16_scaffold_3252_4
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3891..6005)
-----------------
DNA (2115bp)
protein (705aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
Multi-sensor signal transduction histidine kinase Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RU59_ALLVD
periplasmic sensor signal transduction histidine kinase
PLM3_127_b2_sep16_scaffold_3252_trna_1
unknown

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comp(6194..6266)
-----------------
DNA (73bp)
transferRNA Ala
PLM3_127_b2_sep16_scaffold_3252_5
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6333..8426)
-----------------
DNA (2094bp)
protein (698aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI00036335C8
Amidohydrolase {ECO:0000313|EMBL:KGM55863.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
amidohydrolase
PLM3_127_b2_sep16_scaffold_3252_6
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8505..9863)
-----------------
DNA (1359bp)
protein (453aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
glutaminyl-tRNA synthetase Tax=Methylohalobius crimeensis RepID=UPI0003B5827D
gltX; glutamyl-tRNA synthetase
PLM3_127_b2_sep16_scaffold_3252_7
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10280..12196)
-----------------
DNA (1917bp)
protein (639aa)
sulfate adenylyltransferase subunit 1/adenylylsulfate kinase (EC:2.7.1.25 2.7.7.4)
Adenylylsulfate kinase {ECO:0000313|EMBL:ABI57685.1}; EC=2.7.1.25 {ECO:0000313|EMBL:ABI57685.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
Adenylylsulfate kinase Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0A652_ALKEH
PLM3_127_b2_sep16_scaffold_3252_8
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

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comp(12196..13161)
-----------------
DNA (966bp)
protein (322aa)
sulfate adenylyltransferase subunit 2 (EC:2.7.7.4)
sulfate adenylyltransferase subunit 2 Tax=Methylobacter marinus RepID=UPI00037B1D6C
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM3_127_b2_sep16_scaffold_3252_9
Marinobacter sp. AK21, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13172..14947)
-----------------
DNA (1776bp)
protein (592aa)
Potassium transporter TrkA Tax=Marinobacter sp. EN3 RepID=U7HQ88_9ALTE
Sulfate permease, Trk-type {ECO:0000313|EMBL:KEF31651.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. AK21.;"
potassium transporter TrkA
PLM3_127_b2_sep16_scaffold_3252_10
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15125..15556)
-----------------
DNA (432bp)
protein (144aa)
Ypar20 Tax=Pseudomonas alcaligenes RepID=Q939F3_PSEAC
Ypar20 {ECO:0000313|EMBL:AAK73305.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes.;"
PLM3_127_b2_sep16_scaffold_3252_11
unknown

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comp(15578..15856)
-----------------
DNA (279bp)
protein (93aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3252_12

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comp(15869..16159)
-----------------
DNA (291bp)
protein (97aa)
RNP-1 like RNA-binding protein Tax=mine drainage metagenome RepID=T1BVU3_9ZZZZ
RNP-1 like RNA-binding protein {ECO:0000313|EMBL:EQD74002.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RNP-1 like RNA-binding protein
PLM3_127_b2_sep16_scaffold_3252_13
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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comp(16365..16799)
-----------------
DNA (435bp)
protein (145aa)
hypothetical protein bin=bin8_Chloro species=Verrucomicrobium sp. 3C genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin8_Chloro organism_group=Chloroflexi
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3_127_b2_sep16_scaffold_3252_14
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(16813..17106)
-----------------
DNA (294bp)
protein (98aa)
id=3162224 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RBG_16_Anaeromyxobacter_69_14_curated
PLM3_127_b2_sep16_scaffold_3252_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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17273..17689
-----------------
DNA (417bp)
protein (139aa)
DNA binding domain protein, excisionase family Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UJW1_CELFN
excisionase family DNA binding domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_3252_16
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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17670..18212
-----------------
DNA (543bp)
protein (181aa)
Uncharacterized protein Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CUM8_THIA3
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_3252_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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18209..19204
-----------------
DNA (996bp)
protein (332aa)
Putative decarboxylase Tax=Sorangium cellulosum (strain So ce56) RepID=A9G106_SORC5
decarboxylase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM3_127_b2_sep16_scaffold_3252_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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19161..19607
-----------------
DNA (447bp)
protein (149aa)
Putative decarboxylase Tax=Sorangium cellulosum (strain So ce56) RepID=A9G106_SORC5
decarboxylase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM3_127_b2_sep16_scaffold_3252_19
R_WOR_2_63_39, WOR-2, Bacteria

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comp(19638..20195)
-----------------
DNA (558bp)
protein (186aa)
hypothetical protein bin=GWA2_OP3_53_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_63_39_curated
Displaying 20 items

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