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PLM3_127_b2_sep16_scaffold_3298

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Displaying 25 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_3298_1
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(95..1189)
DNA (1095bp) protein (365aa)
Methylated-DNA--protein-cysteine methyltransferase Tax=Sorangium cellulosum (strain So ce56) RepID=A9EU33_SORC5
methylated-DNA--protein-cysteine methyltransferase
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000313|EMBL:CAN91063.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
PLM3_127_b2_sep16_scaffold_3298_2
Monosiga brevicollis, Monosiga, Choanoflagellida, Eukaryota

Not on your lists

comp(1357..1950)
DNA (594bp) protein (198aa)
hypothetical protein Tax=Amorphus coralli RepID=UPI0003643DDD
Predicted protein {ECO:0000313|EMBL:EDQ89377.1}; species="Eukaryota; Choanoflagellida; Codonosigidae; Monosiga.;" source="Monosiga brevicollis (Choanoflagellate).;"
glutathione S-transferase domain-containing protein
PLM3_127_b2_sep16_scaffold_3298_3
unknown

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2306..2683
DNA (378bp) protein (126aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3298_4
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2816..3928)
DNA (1113bp) protein (371aa)
AFG1-family ATPase Tax=Marinobacter adhaerens (strain HP15) RepID=E4PH85_MARAH
Cell division protein ZapE {ECO:0000256|HAMAP-Rule:MF_01919}; Z ring-associated protein ZapE {ECO:0000256|HAMAP-Rule:MF_01919}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
AFG1 family ATPase
PLM3_127_b2_sep16_scaffold_3298_5
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4043..6028)
DNA (1986bp) protein (662aa)
Acetoacetyl-CoA synthase Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BWD7_NITHN
acetoacetyl-CoA synthase
Acetoacetyl-CoA synthase {ECO:0000313|EMBL:ADE15594.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
PLM3_127_b2_sep16_scaffold_3298_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6056..7654)
DNA (1599bp) protein (533aa)
electron-transferring-flavoprotein dehydrogenase (EC:1.5.5.1)
Flavoprotein-ubiquinone oxidoreductase Tax=Rhodanobacter fulvus Jip2 RepID=I4VTZ5_9GAMM
Flavoprotein-ubiquinone oxidoreductase {ECO:0000313|EMBL:EIL90686.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
PLM3_127_b2_sep16_scaffold_3298_7
RLO_RIF05_58_11, RIF5, Bacteria

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comp(7661..9040)
DNA (1380bp) protein (460aa)
peptidase Tax=Pontibacter roseus RepID=UPI00036119B1
peptidase
Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
PLM3_127_b2_sep16_scaffold_3298_8
Pontibacter sp. BAB1700, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9037..10473)
DNA (1437bp) protein (479aa)
M16 family peptidase (EC:3.4.24.-)
Peptidase Tax=Pontibacter sp. BAB1700 RepID=J1FDS9_9BACT
Peptidase {ECO:0000313|EMBL:EJF08379.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
PLM3_127_b2_sep16_scaffold_3298_9
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10603..11367)
DNA (765bp) protein (255aa)
Short-chain dehydrogenase/reductase SDR Tax=Rhodanobacter sp. 115 RepID=I4VLL2_9GAMM
3-hydroxy-2-methylbutyryl-CoA dehydrogenase {ECO:0000313|EMBL:KJV37074.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
short-chain dehydrogenase/reductase SDR
PLM3_127_b2_sep16_scaffold_3298_10
Pseudoalteromonas atlantica, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11557..12345)
DNA (789bp) protein (263aa)
Enoyl-CoA hydratase/isomerase Tax=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) RepID=Q15RQ3_PSEA6
enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ABG41435.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087).;"
PLM3_127_b2_sep16_scaffold_3298_11
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12359..13540)
DNA (1182bp) protein (394aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
acetyl-CoA acetyltransferase Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225BD80
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM3_127_b2_sep16_scaffold_3298_12
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13577..14659)
DNA (1083bp) protein (361aa)
leucine dehydrogenase Tax=Arenimonas oryziterrae RepID=UPI0003B334B8
Leucine dehydrogenase {ECO:0000313|EMBL:KFL37694.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
leucine dehydrogenase
PLM3_127_b2_sep16_scaffold_3298_13
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14867..18307
DNA (3441bp) protein (1147aa)
methylmalonyl-CoA mutase (EC:5.4.99.2)
Methylmalonyl-CoA mutase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F6E7_CONWI
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:KGM53094.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
PLM3_127_b2_sep16_scaffold_3298_14

Not on your lists

comp(18271..19017)
DNA (747bp) protein (249aa)
Membrane or secreted protein containing Phospholipid/glycerol acyltransferase domain protein (Fragment) Tax=mine drainage metagenome RepID=T1BDV7_9ZZZZ
Membrane or secreted protein containing Phospholipid/glycerol acyltransferase domain protein {ECO:0000313|EMBL:EQD51259.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_3298_15
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19227..21200
DNA (1974bp) protein (658aa)
Tyrosine recombinase XerD Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RN44_ALLVD
tyrosine recombinase XerD
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_3298_16

Not on your lists

comp(21329..21691)
DNA (363bp) protein (121aa)
4Fe-4S ferredoxin, iron-sulfur binding protein Tax=mine drainage metagenome RepID=T1AWQ4_9ZZZZ
4Fe-4S ferredoxin, iron-sulfur binding protein {ECO:0000313|EMBL:EQD61907.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
4Fe-4S ferredoxin
PLM3_127_b2_sep16_scaffold_3298_17

Not on your lists

comp(21753..22292)
DNA (540bp) protein (180aa)
ADP-ribose pyrophosphatase Tax=mine drainage metagenome RepID=T1AZW7_9ZZZZ
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:EQD61908.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ADP-ribose pyrophosphatase
PLM3_127_b2_sep16_scaffold_3298_trna_1
unknown

Not on your lists

comp(22304..22387)
DNA (84bp)
transferRNA Leu
PLM3_127_b2_sep16_scaffold_3298_18
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22464..23069
DNA (606bp) protein (202aa)
RNA polymerase, sigma-24 subunit, ECF subfamily bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
RNA polymerase sigma factor, sigma-70 family
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
PLM3_127_b2_sep16_scaffold_3298_19
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23042..23671
DNA (630bp) protein (210aa)
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
PLM3_127_b2_sep16_scaffold_3298_20
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23691..24686
DNA (996bp) protein (332aa)
hypothetical protein Tax=Cryocola sp. 340MFSha3.1 RepID=UPI000362BF34
serine endoprotease
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
PLM3_127_b2_sep16_scaffold_3298_21
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24810..25853
DNA (1044bp) protein (348aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase Tax=Thiorhodovibrio sp. 970 RepID=H8YXY8_9GAMM
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_3298_22
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25850..26971
DNA (1122bp) protein (374aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
queuine tRNA-ribosyltransferase Tax=Thioalkalivibrio sp. ALJ16 RepID=UPI00037B8034
PLM3_127_b2_sep16_scaffold_3298_23
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27032..27361
DNA (330bp) protein (110aa)
Preprotein translocase, YajC subunit Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E1M0_9GAMM
preprotein translocase, YajC subunit
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
PLM3_127_b2_sep16_scaffold_3298_24
Aeromonas diversa, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27377..27991
DNA (615bp) protein (205aa)
Protein translocase subunit SecD Tax=Aeromonas diversa 2478-85 RepID=N9TZE1_9GAMM
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas diversa 2478-85.;"
protein-export membrane protein SecD
Displaying 25 items

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