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PLM3_127_b2_sep16_scaffold_7073

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_7073_1
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(155..613)
DNA (459bp) protein (153aa)
hypothetical protein Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI000289F0CC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAQ18076.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
PLM3_127_b2_sep16_scaffold_7073_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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807..1142
DNA (336bp) protein (112aa)
glycosyl transferase family 36 Tax=Burkholderia oklahomensis RepID=UPI00016A94C2
glycosyltransferase 36
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_7073_3
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1181..2512
DNA (1332bp) protein (444aa)
gluconate 2-dehydrogenase (EC:1.1.99.3)
Gluconate 2-dehydrogenase (Acceptor) Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VGG1_CAUST
Aldehyde dehydrogenase {ECO:0000313|EMBL:KJC56946.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
PLM3_127_b2_sep16_scaffold_7073_4
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2509..2982
DNA (474bp) protein (158aa)
(2Fe-2S)-binding domain protein Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VGG2_CAUST
(2Fe-2S)-binding domain-containing protein
(2Fe-2S)-binding domain protein {ECO:0000313|EMBL:ADG10281.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
PLM3_127_b2_sep16_scaffold_7073_5
Oxalobacteraceae bacterium IMCC9480, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2975..5245
DNA (2271bp) protein (757aa)
putative membrane-bound aldehyde dehydrogenase (pyrroloquinoline-quinone-linked) (EC:1.2.99.3)
Isoquinoline 1-oxidoreductase beta subunit Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1VWB1_9BURK
Isoquinoline 1-oxidoreductase beta subunit {ECO:0000313|EMBL:EGF33084.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae.;" source="Oxalobacteraceae bacterium IMCC9480.;"
PLM3_127_b2_sep16_scaffold_7073_trna_1
unknown

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comp(5323..5396)
DNA (74bp)
transferRNA Pro
PLM3_127_b2_sep16_scaffold_7073_6
unknown

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comp(5927..6355)
DNA (429bp) protein (143aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_7073_7
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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6560..6970
DNA (411bp) protein (137aa)
5-carboxymethyl-2-hydroxymuconate isomerase HpcD-like protein (EC:5.3.3.10)
UPI0003CEF5FB related cluster Tax=unknown RepID=UPI0003CEF5FB
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM3_127_b2_sep16_scaffold_7073_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6967..8478
DNA (1512bp) protein (504aa)
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VJ63_RHOPX
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase {ECO:0000313|EMBL:ADU43204.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
PLM3_127_b2_sep16_scaffold_7073_9
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8514..9425
DNA (912bp) protein (304aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. BT03.;"
dapA; 4-hydroxy-tetrahydrodipicolinate synthase (EC:4.3.3.7)
4-hydroxy-tetrahydrodipicolinate synthase Tax=Burkholderia sp. BT03 RepID=J3BRM8_9BURK
PLM3_127_b2_sep16_scaffold_7073_10
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9422..10306
DNA (885bp) protein (295aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
5-carboxymethyl-2-hydroxymuconate delta-isomerase {ECO:0000313|EMBL:ABM34808.1}; EC=5.3.3.10 {ECO:0000313|EMBL:ABM34808.1};; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
5-carboxymethyl-2-hydroxymuconate delta-isomerase Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TV20_ACIAC
PLM3_127_b2_sep16_scaffold_7073_11
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10272..10769
DNA (498bp) protein (166aa)
Putative homoprotocatechuate degradative operon repressor, transcriptional regulatory protein MarR family, HpcR-like Tax=Bradyrhizobium sp. ORS 375 RepID=H0SCN1_9BRAD
Putative homoprotocatechuate degradative operon repressor, transcriptional regulatory protein MarR family, HpcR-like {ECO:0000313|EMBL:CCD91958.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
homoprotocatechuate degradative operon repressor
PLM3_127_b2_sep16_scaffold_7073_12
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

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10766..11074
DNA (309bp) protein (103aa)
Aromatic-ring-opening dioxygenase LigAB, LigA subunit Tax=Leucothrix mucor RepID=UPI0003B600F7
aromatic-ring-opening dioxygenase LigAB, LigA subunit
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
PLM3_127_b2_sep16_scaffold_7073_13
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

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11071..11901
DNA (831bp) protein (277aa)
Extradiol ring-cleavage dioxygenase class III protein subunit B Tax=Delftia RepID=A9BQP7_DELAS
extradiol ring-cleavage dioxygenase class III protein subunit B
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
PLM3_127_b2_sep16_scaffold_7073_14
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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11914..12735
DNA (822bp) protein (274aa)
Amidohydrolase 2 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J6B6_POLGS
amidohydrolase
Tax=RBG_16_Gamma2_60_9_curated
PLM3_127_b2_sep16_scaffold_7073_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12754..14748
DNA (1995bp) protein (665aa)
Glucose dehydrogenase, PQQ-dependent {ECO:0000313|EMBL:GAO53212.1}; EC=1.1.5.2 {ECO:0000313|EMBL:GAO53212.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
quinoprotein glucose dehydrogenase (EC:1.1.5.2)
Uncharacterized protein Tax=uncultured bacterium RepID=K2B9I2_9BACT
PLM3_127_b2_sep16_scaffold_7073_16
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14697..16217)
DNA (1521bp) protein (507aa)
Amidohydrolase 2 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HS74_PARL1
amidohydrolase 2
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM3_127_b2_sep16_scaffold_7073_17
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(16244..17101)
DNA (858bp) protein (286aa)
HAD hydrolase, family IIA Tax=Streptomyces ipomoeae 91-03 RepID=L1KXG9_9ACTO
Putative sugar phosphatase of HAD superfamily {ECO:0000313|EMBL:EHR51391.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
HAD family sugar phosphatase
PLM3_127_b2_sep16_scaffold_7073_18
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(17224..18759)
DNA (1536bp) protein (512aa)
Putative carboxylase subunit of acetyl-CoA carboxylase-like enzyme Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P8S3_AROAE
xccA; carboxylase subunit of acetyl-CoA carboxylase-like enzyme
Putative carboxylase subunit of acetyl-CoA carboxylase-like enzyme {ECO:0000313|EMBL:CAI06286.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
Displaying 19 items

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