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PLM3_127_b2_sep16_scaffold_1703

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1703_1
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..1512
DNA (1512bp) protein (504aa)
Serine/threonine protein kinase Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GL38_THISH
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:ACL71556.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
PLM3_127_b2_sep16_scaffold_1703_2
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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1619..2713
DNA (1095bp) protein (365aa)
twitching motility protein PilT Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI0003688699
twitching motility protein
Twitching motility protein {ECO:0000313|EMBL:AHK80277.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halochloris str. A.;"
PLM3_127_b2_sep16_scaffold_1703_3
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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2746..3807
DNA (1062bp) protein (354aa)
twitching motility protein PilT Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00037B107B
twitching motility protein
Twitching motility protein {ECO:0000313|EMBL:ACL71558.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
PLM3_127_b2_sep16_scaffold_1703_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

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3899..5506
DNA (1608bp) protein (536aa)
metG; methionyl-tRNA synthetase (EC:6.1.1.10)
hypothetical protein Tax=Uliginosibacterium gangwonense RepID=UPI0003759516
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_1703_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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5446..5898
DNA (453bp) protein (151aa)
metG; methionine--tRNA ligase (EC:6.1.1.10)
Methionine--tRNA ligase Tax=gamma proteobacterium HTCC5015 RepID=B5JW01_9GAMM
Suspect SCG annotation. See neighboring gene [PLM3_127_b2_sep16_scaffold_1703_4].
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1703_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

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5895..6500
DNA (606bp) protein (202aa)
RnfABCDGE type electron transport complex subunit B Tax=Spiribacter salinus M19-40 RepID=R4V3L3_9GAMM
RnfABCDGE type electron transport complex subunit B
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_1703_7
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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6497..7210
DNA (714bp) protein (238aa)
endonuclease III (EC:4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
endonuclease III Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003829E5D
PLM3_127_b2_sep16_scaffold_1703_8
Ectothiorhodospira sp. PHS-1, Ectothiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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7213..7668
DNA (456bp) protein (152aa)
Putative uncharacterized protein Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G4S1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EHQ52808.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Ectothiorhodospira.;" source="Ectothiorhodospira sp. PHS-1.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_1703_9
Aeromonas salmonicida, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7674..8324)
DNA (651bp) protein (217aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas salmonicida.;"
LexA repressor (EC:3.4.21.88)
LexA repressor Tax=Enterobacteriaceae RepID=E5YJB3_9ENTR
PLM3_127_b2_sep16_scaffold_1703_10
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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8943..9260
DNA (318bp) protein (106aa)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI000382AA2E
lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:EIC30925.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium album BG8.;"
PLM3_127_b2_sep16_scaffold_1703_11
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9317..10267)
DNA (951bp) protein (317aa)
hypothetical protein Tax=Methylohalobius crimeensis RepID=UPI0003B4A9C2
hypothetical protein
Tax=RBG_16_Gamma2_64_11_curated
PLM3_127_b2_sep16_scaffold_1703_12
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10350..11318)
DNA (969bp) protein (323aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 Tax=Marinobacter santoriniensis NKSG1 RepID=M7CX22_9ALTE
3-oxoacyl-ACP synthase
Tax=RBG_16_Gammaproteobacteria_51_14_curated
PLM3_127_b2_sep16_scaffold_1703_13
Thiorhodospira sibirica, Thiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11318..12322)
DNA (1005bp) protein (335aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thiorhodospira.;" source="Thiorhodospira sibirica ATCC 700588.;"
Phosphate acyltransferase Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E225_9GAMM
glycerol-3-phosphate acyltransferase PlsX
PLM3_127_b2_sep16_scaffold_1703_14
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12381..12572)
DNA (192bp) protein (64aa)
50S ribosomal protein L32 Tax=Thiocapsa marina 5811 RepID=F9UFT8_9GAMM
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp. AK35.;"
50S ribosomal protein L32
PLM3_127_b2_sep16_scaffold_1703_15
Methylomicrobium alcaliphilum, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12591..13097)
DNA (507bp) protein (169aa)
hypothetical protein Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037EEAB0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE23718.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM; B-2133 / 20Z).;"
PLM3_127_b2_sep16_scaffold_1703_16
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13179..13763
DNA (585bp) protein (195aa)
septum formation protein Maf Tax=Pseudomonas geniculata RepID=UPI000299F543
Maf-like protein L681_06950 {ECO:0000256|HAMAP-Rule:MF_00528}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
Septum formation protein Maf
PLM3_127_b2_sep16_scaffold_1703_17
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13758..14741)
DNA (984bp) protein (328aa)
Pseudouridine synthase Tax=sulfur-oxidizing symbionts RepID=G2DG64_9GAMM
RluA family pseudouridine synthase
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_1703_18
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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15147..17609
DNA (2463bp) protein (821aa)
Ribonuclease E Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GR18_THISH
ribonuclease E
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_1703_19
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(17656..18159)
DNA (504bp) protein (168aa)
Low molecular weight protein-tyrosine-phosphatase {ECO:0000313|EMBL:EEE03623.1}; EC=3.1.3.48 {ECO:0000313|EMBL:EEE03623.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CGD2.;"
Low molecular weight protein-tyrosine-phosphatase Tax=Burkholderia multivorans RepID=B9BZU7_9BURK
low molecular weight phosphotyrosine phosphatase family protein
PLM3_127_b2_sep16_scaffold_1703_20
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18190..18942)
DNA (753bp) protein (251aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
3-deoxy-D-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase Tax=Nitrococcus mobilis Nb-231 RepID=A4BML0_9GAMM
PLM3_127_b2_sep16_scaffold_1703_21
gamma proteobacterium IMCC3088, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18953..19141)
DNA (189bp) protein (63aa)
hypothetical protein Tax=Microbulbifer agarilyticus RepID=UPI0002557EF4
UPF0434 protein IMCC3088_528 {ECO:0000256|HAMAP-Rule:MF_01187}; species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="gamma proteobacterium IMCC3088.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_1703_22
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19143..20936)
DNA (1794bp) protein (598aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
hypothetical protein Tax=Meganema perideroedes RepID=UPI00035E5EF5
dihydrolipoamide dehydrogenase
Displaying 22 items

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