ggKbase home page

PLM3_127_b2_sep16_scaffold_17004

Search features with annotation key words

Displaying 16 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_17004_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

1..759
DNA (759bp) protein (253aa)
YbbR-like protein {ECO:0000313|EMBL:CDM66576.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
YbbR family protein bin=GWC2_Methylomirabilis_70_16 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
PLM3_127_b2_sep16_scaffold_17004_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

790..2160
DNA (1371bp) protein (457aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZBI1_TERRK
PLM3_127_b2_sep16_scaffold_17004_3
unknown

Not on your lists

comp(2168..2776)
DNA (609bp) protein (203aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_17004_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

2832..3707
DNA (876bp) protein (292aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LFA7_CHLTF
PLM3_127_b2_sep16_scaffold_17004_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

3745..4128
DNA (384bp) protein (128aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM64691.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM3_127_b2_sep16_scaffold_17004_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(4204..5937)
DNA (1734bp) protein (578aa)
RNA polymerase sigma factor SigA Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIK4_KORVE
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
sigma 38, RpoS
PLM3_127_b2_sep16_scaffold_17004_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(6003..6995)
DNA (993bp) protein (331aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036D1E25
DNA primase
PLM3_127_b2_sep16_scaffold_17004_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(6958..7749)
DNA (792bp) protein (264aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
DNA primase catalytic subunit (EC:2.7.7.-)
DNA primase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHR3_CHLTF
PLM3_127_b2_sep16_scaffold_17004_9
unknown

Not on your lists

comp(7771..8814)
DNA (1044bp) protein (348aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_17004_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(8855..10165)
DNA (1311bp) protein (437aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Endonuclease MutS2 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGJ6_CHLTF
MutS2 family protein
PLM3_127_b2_sep16_scaffold_17004_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(10158..11429)
DNA (1272bp) protein (424aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Endonuclease MutS2 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NZJ6_GRAMM
DNA mismatch repair protein MutS domain-containing protein
PLM3_127_b2_sep16_scaffold_17004_12
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11701..12204)
DNA (504bp) protein (168aa)
Chemotaxis protein CheW Tax=Rhizobium tropici CIAT 899 RepID=L0LS48_RHITR
chemotaxis protein CheW
Chemotaxis protein CheW {ECO:0000313|EMBL:AGB74047.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
PLM3_127_b2_sep16_scaffold_17004_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

12475..12840
DNA (366bp) protein (122aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
alkylhydroperoxidase Tax=Arenimonas oryziterrae RepID=UPI0003B6D795
hypothetical protein
PLM3_127_b2_sep16_scaffold_17004_14
unknown

Not on your lists

comp(12923..13156)
DNA (234bp) protein (78aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_17004_15
unknown

Not on your lists

comp(13137..13337)
DNA (201bp) protein (67aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_17004_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

13477..14454
DNA (978bp) protein (326aa)
Thiol-disulfide isomerase / thioredoxin Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LK71_CHLTF
Thiol-disulfide isomerase-like thioredoxin {ECO:0000313|EMBL:CDM65785.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Thiol-disulfide isomerase / thioredoxin
Displaying 16 items

View Taxonomy