ggKbase home page

PLM3_127_b2_sep16_scaffold_6845

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_6845_1
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

160..1743
DNA (1584bp) protein (528aa)
Putative uncharacterized protein bin=GWA2_OP3_52_12 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK43486.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_127_b2_sep16_scaffold_6845_2
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1769..2620)
DNA (852bp) protein (284aa)
HPr kinase Tax=uncultured bacterium ws198A12 RepID=I1X5J3_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
PLM3_127_b2_sep16_scaffold_6845_3
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2646..2900)
DNA (255bp) protein (85aa)
Uncharacterized protein Tax=Sphingobium quisquiliarum P25 RepID=T0IEM8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KFG90248.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
PLM3_127_b2_sep16_scaffold_6845_4
unknown

Not on your lists

comp(2920..3225)
DNA (306bp) protein (102aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_6845_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(3853..4632)
DNA (780bp) protein (260aa)
Alpha/beta hydrolase fold protein Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G3B0_CHLAD
Predicted hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:CDM64531.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
alpha/beta hydrolase fold protein
PLM3_127_b2_sep16_scaffold_6845_6
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(5103..5345)
DNA (243bp) protein (81aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Tax=uncultured Acidobacteria bacterium RepID=H5SPS1_9BACT
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
PLM3_127_b2_sep16_scaffold_6845_7
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(5330..6298)
DNA (969bp) protein (323aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Tax=Solibacter usitatus (strain Ellin6076) RepID=ISPG_SOLUE
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3_127_b2_sep16_scaffold_6845_8
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(6501..7469)
DNA (969bp) protein (323aa)
TonB-like protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ITI5_KORVE
TonB-like protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM3_127_b2_sep16_scaffold_6845_9
unknown

Not on your lists

comp(7438..7995)
DNA (558bp) protein (186aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_6845_10
unknown

Not on your lists

8013..8123
DNA (111bp) protein (37aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_6845_11
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

8321..9136
DNA (816bp) protein (272aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01SF0_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ87420.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3_127_b2_sep16_scaffold_6845_12

Not on your lists

9158..9850
DNA (693bp) protein (231aa)
Putative uncharacterized protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEM3_CHLTF
Uncharacterized protein {ECO:0000313|EMBL:AIA14069.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_6845_13
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(9895..10767)
DNA (873bp) protein (291aa)
Chromosome segregation DNA-binding protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LF45_CHLTF
chromosome segregation DNA-binding protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PLM3_127_b2_sep16_scaffold_6845_14
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(10764..11522)
DNA (759bp) protein (253aa)
Chromosome segregation ATPase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LF44_CHLTF
chromosome segregation ATPase
Chromosome segregation ATPase {ECO:0000313|EMBL:AEP12972.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM3_127_b2_sep16_scaffold_6845_15
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(11668..12357)
DNA (690bp) protein (230aa)
Ribosomal RNA small subunit methyltransferase G Tax=Koribacter versatilis (strain Ellin345) RepID=RSMG_KORVE
methyltransferase GidB
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
PLM3_127_b2_sep16_scaffold_6845_16
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(12521..14371)
DNA (1851bp) protein (617aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG Tax=Koribacter versatilis (strain Ellin345) RepID=MNMG_KORVE
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
PLM3_127_b2_sep16_scaffold_6845_17
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(14379..14948)
DNA (570bp) protein (190aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
tRNA modification GTPase MnmE Tax=uncultured Acidobacteria bacterium RepID=H5SEN5_9BACT
tRNA modification GTPase TrmE
Displaying 17 items

View Taxonomy