ggKbase home page

PLM3_127_b2_sep16_scaffold_11939

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_11939_1
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(2..1441)
DNA (1440bp) protein (480aa)
DNA polymerase III, alpha subunit; K02337 DNA polymerase III subunit alpha [EC:2.7.7.7] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA polymerase III subunit alpha
Tax=RBG_16_Acidobacteria_70_10_curated
PLM3_127_b2_sep16_scaffold_11939_2
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(1709..2752)
DNA (1044bp) protein (348aa)
guaA; GMP synthase; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
guaA; GMP synthase glutamine-hydrolyzing (EC:6.3.5.2)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM3_127_b2_sep16_scaffold_11939_3
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

3246..4478
DNA (1233bp) protein (411aa)
Pyrrolo-quinoline quinone repeat-containing protein Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SF96_RHOMR
Pyrrolo-quinoline quinone repeat-containing protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM3_127_b2_sep16_scaffold_11939_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

4493..5374
DNA (882bp) protein (294aa)
Protoheme IX farnesyltransferase bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
protoheme IX farnesyltransferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3_127_b2_sep16_scaffold_11939_5
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5488..5796
DNA (309bp) protein (103aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
putative integral inner membrane protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_127_b2_sep16_scaffold_11939_6
unknown

Not on your lists

comp(5989..6243)
DNA (255bp) protein (85aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_11939_7
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(6340..6762)
DNA (423bp) protein (141aa)
NUDIX hydrolase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRZ8_KORVE
NUDIX hydrolase
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3_127_b2_sep16_scaffold_11939_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(6759..7520)
DNA (762bp) protein (254aa)
CDP-diacylglycerol--serine O-phosphatidyltransferase; K00998 phosphatidylserine synthase [EC:2.7.8.8] bin=bin7_NC10_sister species=Halomonas jeotgali genus=Halomonas taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
pssA; phosphatidylserine synthase
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_11939_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(7580..7810)
DNA (231bp) protein (77aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003769AD8
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3_127_b2_sep16_scaffold_11939_10
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7922..8317)
DNA (396bp) protein (132aa)
Ribosomal-protein-alanine acetyltransferase Tax=Desulfovibrio sp. 6_1_46AFAA RepID=G1UNY2_9DELT
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:EGW52709.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
ribosomal-protein-alanine acetyltransferase
PLM3_127_b2_sep16_scaffold_11939_11
R_Proteobacteria_53_8, Proteobacteria, Bacteria

Not on your lists

comp(8314..8970)
DNA (657bp) protein (219aa)
Putative protease, peptidase M22 family Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YFE7_MOBAS
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
PLM3_127_b2_sep16_scaffold_11939_12
Photobacterium halotolerans, Photobacterium, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8998..9204
DNA (207bp) protein (69aa)
DNA mismatch repair protein MutS Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E2J3_9GAMM
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.;" source="Photobacterium halotolerans.;"
mutS; DNA mismatch repair protein MutS
PLM3_127_b2_sep16_scaffold_11939_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

9204..11348
DNA (2145bp) protein (715aa)
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS bin=CNBR_ACIDO species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
mutS-1; DNA mismatch repair ATPase MutS-1
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Displaying 13 items

View Taxonomy