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PLM3_127_b2_sep16_scaffold_6719

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_6719_1
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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1..1419
DNA (1419bp) protein (473aa)
Chromosome partition protein Smc Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I458_CALAS
smc; chromosome segregation protein SMC
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM3_127_b2_sep16_scaffold_6719_2
RBG_16_Chloroflexi_64_43_curated, Chloroflexi, Bacteria

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1404..2327
DNA (924bp) protein (308aa)
atm:ANT_22450 smc; chromosome segregation protein SMC; K03529 chromosome segregation protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
smc; chromosome segregation protein SMC
Tax=RBG_16_Chloroflexi_64_43_curated
PLM3_127_b2_sep16_scaffold_6719_3

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comp(2333..2710)
DNA (378bp) protein (126aa)
hypothetical protein Tax=Azoarcus toluclasticus RepID=UPI00035F97DD
Uncharacterized protein {ECO:0000313|EMBL:KKM82694.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
LuxR family transcriptional regulator
PLM3_127_b2_sep16_scaffold_6719_4
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2745..3143)
DNA (399bp) protein (133aa)
Histidine kinase Tax=Labrenzia RepID=U7FRA8_9RHOB
Histidine kinase {ECO:0000313|EMBL:ERP87802.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
Fis family two component sigma-54 specific transcriptional regulator
PLM3_127_b2_sep16_scaffold_6719_5
unknown

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comp(3182..3427)
DNA (246bp) protein (82aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_6719_6

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comp(3656..4309)
DNA (654bp) protein (218aa)
LuxR family transcriptional regulator Tax=Herbaspirillum lusitanum RepID=UPI00031E383B
Marine sediment metagenome DNA, contig: S06H3_S09569 {ECO:0000313|EMBL:GAI44175.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
LuxR family transcriptional regulator
PLM3_127_b2_sep16_scaffold_6719_7

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comp(4334..6052)
DNA (1719bp) protein (573aa)
Marine sediment metagenome DNA, contig: S01H1_L06969 {ECO:0000313|EMBL:GAF67315.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Putative Hybrid sensor histidine kinase bin=GWE1_T_denit_62_9 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
sensor histidine kinase, PAS, GAF, PAS and PAS domain-containing
PLM3_127_b2_sep16_scaffold_6719_8
Calothrix parietina, Calothrix, Nostocales, Cyanobacteria, Bacteria

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comp(6250..8103)
DNA (1854bp) protein (618aa)
MCP methyltransferase, CheR-type with PAS/PAC sensor (EC:2.1.1.80)
MCP methyltransferase, CheR-type with PAS/PAC sensor {ECO:0000313|EMBL:AFZ03239.1}; EC=2.1.1.80 {ECO:0000313|EMBL:AFZ03239.1};; species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Calothrix.;" source="Calothrix sp. PCC 6303.;"
MCP methyltransferase, CheR-type with PAS/PAC sensor Tax=Calothrix sp. PCC 6303 RepID=K9V6A4_9CYAN
PLM3_127_b2_sep16_scaffold_6719_9
RLO_PLX_64_10, Bacteria

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comp(8164..8340)
DNA (177bp) protein (59aa)
CheB methylesterase (EC:3.1.1.61)
CheB methylesterase Tax=Gloeocapsa sp. PCC 7428 RepID=K9XDE7_9CHRO
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3_127_b2_sep16_scaffold_6719_10
Cylindrospermum stagnale, Cylindrospermum, Nostocales, Cyanobacteria, Bacteria

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comp(8301..8807)
DNA (507bp) protein (169aa)
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Tax=Cylindrospermum stagnale PCC 7417 RepID=K9WUP3_9NOST
chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain {ECO:0000313|EMBL:AFZ24075.1}; species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Cylindrospermum.;" source="Cylindrospermum stagnale PCC 7417.;"
PLM3_127_b2_sep16_scaffold_6719_11
RBG_13_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

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comp(9056..10168)
DNA (1113bp) protein (371aa)
Uncharacterized protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I149_CALAS
hypothetical protein
Tax=RBG_13_Chloroflexi_56_8_curated
PLM3_127_b2_sep16_scaffold_6719_12
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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comp(10155..11111)
DNA (957bp) protein (319aa)
Aspartate-semialdehyde dehydrogenase Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I148_CALAS
asd; aspartate-semialdehyde dehydrogenase
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:BAL98985.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM3_127_b2_sep16_scaffold_6719_13
S_OP1_64_32, KB1, Bacteria

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comp(11203..12369)
DNA (1167bp) protein (389aa)
thrC; threonine synthase (EC:4.2.3.1)
Threonine synthase Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L1J2_THERP
Tax=S_OP1_64_32
PLM3_127_b2_sep16_scaffold_6719_14
Cyanidioschyzon merolae, Cyanidioschyzon, Cyanidiales, Bangiophyceae, Eukaryota

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comp(12468..13682)
DNA (1215bp) protein (405aa)
Similar to hedgehog protein Tax=Cyanidioschyzon merolae strain 10D RepID=M1VFQ8_CYAME
Similar to hedgehog protein {ECO:0000313|EMBL:BAM79403.1}; species="Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; Cyanidioschyzon.;" source="Cyanidioschyzon merolae strain 10D.;"
Rhs element Vgr family protein
PLM3_127_b2_sep16_scaffold_6719_15
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(13921..14583)
DNA (663bp) protein (221aa)
Tetratricopeptide TPR_2 repeat protein Tax=Roseiflexus sp. (strain RS-1) RepID=A5UUN6_ROSS1
hypothetical protein
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:ABQ90339.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
PLM3_127_b2_sep16_scaffold_6719_16
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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comp(14732..15709)
DNA (978bp) protein (326aa)
Tax=RBG_16_Chloroflexi_63_12_curated
Displaying 16 items

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