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PLM3_127_b2_sep16_scaffold_6872

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_6872_1
unknown

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comp(3..86)
DNA (84bp) protein (28aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_6872_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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262..1569
DNA (1308bp) protein (436aa)
Glycerol 3-phosphate permease Tax=Cystobacter fuscus DSM 2262 RepID=L9K399_9DELT bin=16ft_combo_ws3_JS1 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
major facilitator transporter
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_6872_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1588..2409)
DNA (822bp) protein (274aa)
Formate dehydrogenase chain D (EC:1.2.1.2) bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Streptomyces venezuelae genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
fdhD; formate dehydrogenase subunit delta
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_6872_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(2449..3249)
DNA (801bp) protein (267aa)
thyX; FAD-dependent thymidylate synthase (EC:2.1.1.148); K03465 thymidylate synthase (FAD) [EC:2.1.1.148] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
thymidylate synthase (EC:2.1.1.148)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_6872_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3406..4587)
DNA (1182bp) protein (394aa)
kynureninase (EC:3.7.1.3)
Kynureninase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q023I5_SOLUE bin=16ft_combo_ws3_JS1 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_6872_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(4584..5171)
DNA (588bp) protein (196aa)
Putative uncharacterized protein Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2T7_9PROT bin=16ft_combo_ws3_JS1 species=Mariprofundus ferrooxydans genus=Mariprofundus taxon_order=Mariprofundales taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_6872_7
unknown

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comp(5229..5819)
DNA (591bp) protein (197aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_6872_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

5992..6357
DNA (366bp) protein (122aa)
Putative iron-sulfur cluster-binding protein, Rieske family Tax=Methyloversatilis universalis FAM5 RepID=F5R8P6_9RHOO bin=16ft_combo_ws3_JS1 species=Methyloversatilis universalis genus=Methyloversatilis taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Ferredoxin, 2Fe-2S
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_6872_9
Desulfococcus multivorans, Desulfococcus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6371..7069)
DNA (699bp) protein (233aa)
Ornithine cyclodeaminase/mu-crystallin Tax=Desulfococcus multivorans DSM 2059 RepID=S7U718_DESML
Ornithine cyclodeaminase/mu-crystallin {ECO:0000313|EMBL:EPR44920.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfococcus.;" source="Desulfococcus multivorans DSM 2059.;"
hypothetical protein
Displaying 9 items

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