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PLM3_127_b2_sep16_scaffold_13449

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_13449_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

658..1089
DNA (432bp) protein (144aa)
sdhA; Succinate dehydrogenase flavoprotein subunit (EC:1.3.99.1)
Succinate dehydrogenase flavoprotein subunit bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_13449_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

1089..1793
DNA (705bp) protein (235aa)
Succinate dehydrogenase subunit B bin=GWC2_Methylomirabilis_70_24 species=Nocardioides sp. genus=Nocardioides taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
fumarate reductase
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_13449_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

2534..2923
DNA (390bp) protein (130aa)
succinyl-CoA synthetase subunit beta (EC:6.2.1.5); K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5] bin=bin7_NC10_sister species=Thermocrinis albus genus=Thermocrinis taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin7_NC10_sister organism_group=NC10
sucC; succinyl-CoA synthetase subunit beta
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_13449_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

2989..3864
DNA (876bp) protein (292aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
succinyl-CoA synthetase, alpha subunit
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_13449_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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3890..4315
DNA (426bp) protein (142aa)
nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase bin=GWC2_Methylomirabilis_70_16 species=Acidithiobacillus caldus genus=Acidithiobacillus taxon_order=Acidithiobacillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_13449_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

4429..4836
DNA (408bp) protein (136aa)
id=4737569 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_13449_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4925..5488
DNA (564bp) protein (188aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Rivularia sp. PCC 7116 genus=Rivularia taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_13449_8
unknown

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comp(5677..6159)
DNA (483bp) protein (161aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_13449_9
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6276..7364)
DNA (1089bp) protein (363aa)
Glycosyl transferase family 39 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CLH1_SIDLE
glycosyl transferase family 39
Glycosyl transferase family 39 {ECO:0000313|EMBL:ADE10559.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
PLM3_127_b2_sep16_scaffold_13449_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7422..7736
DNA (315bp) protein (105aa)
Prevent-host-death family protein bin=GWF2_Methylomirabilis_70_14 species=Deinococcus geothermalis genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
prevent-host-death family protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_13449_11
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

8002..8319
DNA (318bp) protein (106aa)
hypothetical protein, partial Tax=Latescibacteria bacterium SCGC AAA252-D10 RepID=UPI000375AA34
IS1380 family transposase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM3_127_b2_sep16_scaffold_13449_12
RBG_13_OP3X_46_9_curated, OP3X, Bacteria

Not on your lists

8534..9655
DNA (1122bp) protein (374aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PH41_9BACT
hypothetical protein
Tax=RBG_13_OP3X_46_9_curated
PLM3_127_b2_sep16_scaffold_13449_13
unknown

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9636..10112
DNA (477bp) protein (159aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_13449_14
unknown

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10288..11502
DNA (1215bp) protein (405aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_13449_15
unknown

Not on your lists

11624..11812
DNA (189bp) protein (63aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_13449_16
R_RIF_OD107_43_32, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

11821..12828
DNA (1008bp) protein (336aa)
Methyltransferase type 11 bin=GWB2_Ignavibacteria_35_12 species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OD107_43_32_curated
PLM3_127_b2_sep16_scaffold_13449_17
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13011..13448
DNA (438bp) protein (146aa)
Putative uncharacterized protein Tax=Magnetospirillum gryphiswaldense RepID=A4U2X7_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM3_127_b2_sep16_scaffold_13449_18
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13456..13608
DNA (153bp) protein (51aa)
hypothetical protein Tax=Bradyrhizobium japonicum RepID=UPI00037F496A
hypothetical protein
Tax=RBG_16_Gamma2_64_11_curated
PLM3_127_b2_sep16_scaffold_13449_19
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13620..15440
DNA (1821bp) protein (607aa)
hypothetical protein Tax=Methylocystis rosea RepID=UPI00035EE4AE
carbamoyl transferase
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM3_127_b2_sep16_scaffold_13449_20
unknown

Not on your lists

15678..16115
DNA (438bp) protein (146aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_13449_21
Pseudomonas savastanoi, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16194..16790)
DNA (597bp) protein (199aa)
Phosphoglycerol transferase I {ECO:0000313|EMBL:EGH16377.1}; EC=2.7.8.20 {ECO:0000313|EMBL:EGH16377.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas savastanoi pv. glycinea str. race 4.;"
Phosphoglycerol transferase I Tax=Pseudomonas syringae pv. pisi str. 1704B RepID=F3GBN5_PSESJ
PLM3_127_b2_sep16_scaffold_13449_22
Desulfovibrio desulfuricans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17207..18334)
DNA (1128bp) protein (376aa)
hypothetical protein Tax=Chlorogloeopsis RepID=UPI00030E7542
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:EGB16449.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio desulfuricans ND132.;"
PLM3_127_b2_sep16_scaffold_13449_23
Moorea producens, Moorea, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(18361..18834)
DNA (474bp) protein (158aa)
Methyltransferase domain protein Tax=Moorea producens 3L RepID=F4XYP9_9CYAN
Methyltransferase domain protein {ECO:0000313|EMBL:EGJ30190.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Moorea.;" source="Moorea producens 3L.;"
putative Methyltransferase
PLM3_127_b2_sep16_scaffold_13449_24
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(18837..19433)
DNA (597bp) protein (199aa)
SAM-dependent methyltransferase Tax=Patulibacter americanus RepID=UPI0003B37A02
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM3_127_b2_sep16_scaffold_13449_25
unknown

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19640..20149
DNA (510bp) protein (170aa)

This feature has no annotations

Displaying 25 items

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