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PLM3_30_b1_sep16_scaffold_2

Search features with annotation key words

Displaying items 1-30 of 102 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_2_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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289..1347
DNA (1059bp) protein (353aa)
adh4; NAD-dependent alcohol dehydrogenase (EC:1.1.1.1)
NAD-dependent alcohol dehydrogenase {ECO:0000313|EMBL:AFU59601.1}; EC=1.1.1.1 {ECO:0000313|EMBL:AFU59601.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
NAD-dependent alcohol dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE04_NITGG
PLM3_30_b1_sep16_scaffold_2_2
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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1692..3446
DNA (1755bp) protein (585aa)
F5/8 type C domain-containing protein Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CB18_MYXFH
F5/8 type C domain-containing protein
F5/8 type C domain-containing protein {ECO:0000313|EMBL:AFE03517.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
PLM3_30_b1_sep16_scaffold_2_3
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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3803..5011
DNA (1209bp) protein (403aa)
gltA; citrate synthase (EC:2.3.3.1)
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; EC=2.3.3.16 {ECO:0000256|PIRNR:PIRNR001369};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Citrate synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICJ4_NITGG
PLM3_30_b1_sep16_scaffold_2_trna_1
unknown

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5124..5210
DNA (87bp)
transferRNA Cys
PLM3_30_b1_sep16_scaffold_2_4
unknown

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comp(5587..5733)
DNA (147bp) protein (49aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2_5
unknown

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comp(5883..6218)
DNA (336bp) protein (112aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2_6
unknown

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comp(7374..7646)
DNA (273bp) protein (91aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2_7
unknown

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comp(7838..8125)
DNA (288bp) protein (96aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2_8
unknown

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comp(8184..8468)
DNA (285bp) protein (95aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2_9

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8638..8937
DNA (300bp) protein (100aa)
Uncharacterized protein Tax=uncultured archaeon RepID=I3RKD1_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:AFK24791.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_2_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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9533..10003
DNA (471bp) protein (157aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKA1_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58752.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_2_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10026..10307
DNA (282bp) protein (94aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBU6_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58751.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_2_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(10413..11882)
DNA (1470bp) protein (490aa)
Putative FAD linked oxidase-like protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN52_NITGG
FAD linked oxidase-like protein
Putative FAD linked oxidase-like protein {ECO:0000313|EMBL:AFU58769.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_2_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(12293..13189)
DNA (897bp) protein (299aa)
map; methionyl aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01975, ECO:0000256|RuleBase:RU003653}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01975};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01975};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01975, ECO:0000256|RuleBase:RU003653};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01975}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Methionine aminopeptidase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INA9_NITGG
PLM3_30_b1_sep16_scaffold_2_trna_2
unknown

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13392..13465
DNA (74bp)
transferRNA Pro
PLM3_30_b1_sep16_scaffold_2_14
unknown

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comp(13562..14086)
DNA (525bp) protein (175aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2_15

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comp(14237..14698)
DNA (462bp) protein (154aa)
Putative Endoribonuclease L-PSP, YjgF family protein Tax=uncultured archaeon RepID=I3RKG1_9ARCH
Putative Endoribonuclease L-PSP, YjgF family protein {ECO:0000313|EMBL:AFK24821.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
putative endoribonuclease L-PSP
PLM3_30_b1_sep16_scaffold_2_16
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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14868..15104
DNA (237bp) protein (79aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC16884.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_2_17
unknown

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15646..15846
DNA (201bp) protein (67aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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15976..16314
DNA (339bp) protein (113aa)
Putative nitrogen regulatory protein P-II Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHR2_NITGG
nitrogen regulatory protein P-II
Putative nitrogen regulatory protein P-II {ECO:0000313|EMBL:AFU57372.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_2_19
unknown

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comp(16367..16510)
DNA (144bp) protein (48aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2_20
unknown

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comp(16681..17187)
DNA (507bp) protein (169aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2_21
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(17347..17856)
DNA (510bp) protein (170aa)
Putative CMP/dCMP deaminase zinc-binding protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IP33_NITGG
CMP/dCMP deaminase zinc-binding protein
Putative CMP/dCMP deaminase zinc-binding protein {ECO:0000313|EMBL:AFU60424.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_2_22
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(17949..18746)
DNA (798bp) protein (266aa)
Putative glutamate racemase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILJ6_NITGG
glutamate racemase
Putative glutamate racemase {ECO:0000313|EMBL:AFU60463.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_2_23
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(18963..19343)
DNA (381bp) protein (127aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IA71_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF84519.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_2_24
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(19414..20274)
DNA (861bp) protein (287aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJD2_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58367.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_2_25
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20471..21058
DNA (588bp) protein (196aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_01208}; Short=OPRT {ECO:0000255|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000255|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000255|HAMAP-Rule:MF_01208};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
Orotate phosphoribosyltransferase Tax=Rhodopseudomonas palustris (strain BisB5) RepID=PYRE_RHOPS
PLM3_30_b1_sep16_scaffold_2_26
unknown

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comp(21308..21616)
DNA (309bp) protein (103aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2_27
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(21776..22600)
DNA (825bp) protein (275aa)
Putative dihydroorotate dehydrogenase electron transfer subunit Tax=Thaumarchaeota archaeon N4 RepID=V6AU29_9ARCH
Probable dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
oxidoreductase FAD/NAD(P)-binding subunit
PLM3_30_b1_sep16_scaffold_2_28

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comp(22584..23510)
DNA (927bp) protein (309aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_67_B07.;"
Dihydroorotate dehydrogenase Tax=Thaumarchaeota archaeon N4 RepID=V6AU69_9ARCH
putative dihydroorotate oxidase, catalytic subunit
Displaying items 1-30 of 102 in total

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