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PLM3_30_b1_sep16_scaffold_412

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_412_1
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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391..1746
DNA (1356bp) protein (452aa)
glutamate-1-semialdehyde aminotransferase (EC:5.4.3.8)
Glutamate-1-semialdehyde aminotransferase {ECO:0000313|EMBL:AIF83514.1}; EC=5.4.3.8 {ECO:0000313|EMBL:AIF83514.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Glutamate-1-semialdehyde 2,1-aminomutase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEP2_NITGG
PLM3_30_b1_sep16_scaffold_412_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1881..3260
DNA (1380bp) protein (460aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IH81_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58213.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_412_3
Candidatus Nitrosopelagicus brevis, Candidatus Nitrosopelagicus, Thaumarchaeota, Archaea

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3363..4328
DNA (966bp) protein (322aa)
Tubulin/FtsZ GTPase Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BFV7_9ARCH
tubulin/FtsZ family, GTPase domain protein
Tubulin/FtsZ family, GTPase domain protein {ECO:0000313|EMBL:AJA91858.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Candidatus Nitrosopelagicus brevis.;"
PLM3_30_b1_sep16_scaffold_412_4

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comp(4433..4717)
DNA (285bp) protein (95aa)
Putative ribosomal protein L31e Tax=uncultured archaeon RepID=I3RKF1_9ARCH
50S ribosomal protein L31e {ECO:0000256|HAMAP-Rule:MF_00410}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
ribosomal protein L31E
PLM3_30_b1_sep16_scaffold_412_5
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(5346..5726)
DNA (381bp) protein (127aa)
heme/copper-type cytochrome/quinol oxidases, subunit 2
Heme/copper-type cytochrome/quinol oxidases, subunit 2 {ECO:0000313|EMBL:AIF83757.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_412_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(5854..6183)
DNA (330bp) protein (110aa)
TRAM domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBW5_NITGG
TRAM domain-containing protein
TRAM domain-containing protein {ECO:0000313|EMBL:AFU58781.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_412_7
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(6211..7044)
DNA (834bp) protein (278aa)
aspartate dehydrogenase (EC:1.4.1.21)
Probable L-aspartate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01265}; EC=1.4.1.21 {ECO:0000256|HAMAP-Rule:MF_01265};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
L-aspartate dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IG64_NITGG
PLM3_30_b1_sep16_scaffold_412_8
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(7148..7330)
DNA (183bp) protein (61aa)
30S ribosomal protein S30e Tax=Candidatus Nitrososphaera gargensis RepID=K0IN54_NITGG
rps30e; 30S ribosomal protein S30e
30S ribosomal protein S30e {ECO:0000313|EMBL:AFU58779.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_412_9
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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7499..8449
DNA (951bp) protein (317aa)
quinolinate synthetase (EC:2.5.1.72)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Quinolinate synthase A Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIF0_NITGG
PLM3_30_b1_sep16_scaffold_412_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(8483..9361)
DNA (879bp) protein (293aa)
nadC; nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase [carboxylating] {ECO:0000256|PIRNR:PIRNR006250}; EC=2.4.2.19 {ECO:0000256|PIRNR:PIRNR006250};; Quinolinate phosphoribosyltransferase [decarboxylating] {ECO:0000256|PIRNR:PIRNR006250}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Nicotinate-nucleotide pyrophosphorylase [carboxylating] Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKA8_NITGG
PLM3_30_b1_sep16_scaffold_412_11
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(9358..9546)
DNA (189bp) protein (63aa)
rpoE''; DNA-directed RNA polymerase, subunit E`` (EC:2.7.7.6)
Transcription elongation factor Spt4 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBW1_NITGG
Transcription elongation factor Spt4 {ECO:0000256|HAMAP-Rule:MF_00949}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_412_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(9547..10146)
DNA (600bp) protein (200aa)
rpoE`; DNA-directed RNA polymerase, subunit E` (EC:2.7.7.6)
DNA-directed RNA polymerase, subunit E {ECO:0000313|EMBL:AFU58775.1}; EC=2.7.7.6 {ECO:0000313|EMBL:AFU58775.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
DNA-directed RNA polymerase, subunit E Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IG60_NITGG
PLM3_30_b1_sep16_scaffold_412_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10265..11371
DNA (1107bp) protein (369aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKA7_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58772.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_412_14
Candidatus Nitrosopumilus sp. D3C, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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11355..11915
DNA (561bp) protein (187aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
UPF0218 protein NPIRD3C_0878 {ECO:0000256|HAMAP-Rule:MF_00590}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. D3C.;"
PLM3_30_b1_sep16_scaffold_412_15
unknown

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11893..12027
DNA (135bp) protein (45aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_412_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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12278..13363
DNA (1086bp) protein (362aa)
Cobalamin biosynthesis protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IK96_NITGG
cbiG; cobalamin biosynthesis protein
Cobalamin biosynthesis protein {ECO:0000313|EMBL:AFU58737.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_412_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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13356..14117
DNA (762bp) protein (254aa)
Putative cobalamin (Vitamin B12) biosynthesis CbiX protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IID0_NITGG
cobalamin (vitamin B12) biosynthesis CbiX protein
Putative cobalamin (Vitamin B12) biosynthesis CbiX protein {ECO:0000313|EMBL:AFU58733.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_412_18
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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14110..14811
DNA (702bp) protein (234aa)
Precorrin-8X methylmutase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IK94_NITGG
putative cobalamin (vitamin B12) biosynthesis CbiX protein (modular protein)
Putative cobalamin (Vitamin B12) biosynthesis CbiX protein (Modular protein) {ECO:0000313|EMBL:AIC14632.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_412_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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14944..15900
DNA (957bp) protein (319aa)
Putative threonyl/alanyl--tRNA ligase, SAD Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEM1_NITGG
threonyl/alanyl--tRNA ligase, SAD
Putative threonyl/alanyl--tRNA ligase, SAD {ECO:0000313|EMBL:AFU57223.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_412_20
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(15993..17126)
DNA (1134bp) protein (378aa)
dbh2; DNA polymerase IV (EC:2.7.7.7)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
DNA polymerase IV Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN64_NITGG
PLM3_30_b1_sep16_scaffold_412_21
unknown

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comp(17139..17402)
DNA (264bp) protein (88aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_412_22
unknown

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17414..18514
DNA (1101bp) protein (367aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_412_23
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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18894..19187
DNA (294bp) protein (98aa)
DNA/RNA-binding protein Alba Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBZ0_NITGG
albA2; DNA/RNA-binding protein Alba
DNA/RNA-binding protein Alba {ECO:0000256|HAMAP-Rule:MF_01122}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_412_24
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(19557..20345)
DNA (789bp) protein (263aa)
pit; putative inorganic phosphate transporter
Putative inorganic phosphate transporter {ECO:0000313|EMBL:AIC16917.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
low-affinity inorganic phosphate transporter bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
PLM3_30_b1_sep16_scaffold_412_25
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(20355..20987)
DNA (633bp) protein (211aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJL5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59393.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_412_26
unknown

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comp(21511..21762)
DNA (252bp) protein (84aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_412_27
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(21934..22458)
DNA (525bp) protein (175aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC15726.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_412_28
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(22575..24107)
DNA (1533bp) protein (511aa)
Putative Sodium:solute symporter family protein Tax=uncultured marine crenarchaeote HF4000_APKG7F11 RepID=B3T9J3_9ARCH
Na+/proline symporter
Na+/proline symporter {ECO:0000313|EMBL:AIF84942.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_412_29
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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24347..25495
DNA (1149bp) protein (383aa)
agmatinase (EC:3.5.3.11)
Agmatinase {ECO:0000313|EMBL:AIF84945.1}; EC=3.5.3.11 {ECO:0000313|EMBL:AIF84945.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Putative arginase family protein Tax=uncultured marine crenarchaeote HF4000_APKG7F11 RepID=B3T9J6_9ARCH
PLM3_30_b1_sep16_scaffold_412_30

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25656..25907
DNA (252bp) protein (84aa)
Putative uncharacterized protein Tax=uncultured marine crenarchaeote HF4000_APKG7F11 RepID=B3T9J7_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKM21776.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
urea amidohydrolase (urease) gamma subunit
Displaying items 1-30 of 42 in total

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