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PLM3_30_b1_sep16_scaffold_1642

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_1642_1
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..157)
DNA (156bp) protein (52aa)
Putative uncharacterized protein Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SVF6_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA03735.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
PLM3_30_b1_sep16_scaffold_1642_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(224..646)
DNA (423bp) protein (141aa)
ubiquinol-cytochrome C reductase Tax=Rhodopseudomonas sp. B29 RepID=UPI00034A0FF1
hypothetical protein
Ubiquinol-cytochrome C reductase {ECO:0000313|EMBL:KIZ47115.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
PLM3_30_b1_sep16_scaffold_1642_3
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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740..1693
DNA (954bp) protein (318aa)
hypothetical protein bin=bin7_NC10_sister species=Afipia birgiae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RBG_16_Gamma2_60_9_curated
PLM3_30_b1_sep16_scaffold_1642_4
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1790..2578)
DNA (789bp) protein (263aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
Glycerol-3-phosphate dehydrogenase [NAD(P)+] Tax=Bradyrhizobium sp. YR681 RepID=J3CJ87_9BRAD
gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+]
PLM3_30_b1_sep16_scaffold_1642_5
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2673..3758)
DNA (1086bp) protein (362aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
gcp; putative DNA-binding/iron metalloprotein/AP endonuclease (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase Tax=Rhodovulum sp. PH10 RepID=J6JB33_9RHOB
PLM3_30_b1_sep16_scaffold_1642_6
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3770..4690
DNA (921bp) protein (307aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
Porphobilinogen deaminase Tax=Rhodovulum sp. PH10 RepID=J6UFV1_9RHOB
hemC; porphobilinogen deaminase
PLM3_30_b1_sep16_scaffold_1642_7
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4692..5378
DNA (687bp) protein (229aa)
Uroporphyrinogen-III synthase Tax=Rhodovulum sp. PH10 RepID=J5PRG0_9RHOB
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:EJW12662.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
uroporphyrinogen III synthase HEM4
PLM3_30_b1_sep16_scaffold_1642_8
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5418..6818
DNA (1401bp) protein (467aa)
Uncharacterized protein Tax=Rhodovulum sp. PH10 RepID=J6LIJ2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW12663.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_1642_9
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6821..8371
DNA (1551bp) protein (517aa)
HemY domain protein Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A5X6_STAND
HemY domain-containing protein
HemY domain protein {ECO:0000313|EMBL:ADH90091.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
PLM3_30_b1_sep16_scaffold_1642_10
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8784..9935)
DNA (1152bp) protein (384aa)
oxalate decarboxylase (EC:4.1.1.2)
Oxalate decarboxylase {ECO:0000313|EMBL:BAQ15756.1}; EC=4.1.1.2 {ECO:0000313|EMBL:BAQ15756.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
Bicupin, oxalate decarboxylase/oxidase Tax=Schlesneria paludicola RepID=UPI00029A874D
PLM3_30_b1_sep16_scaffold_1642_11
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10089..10694)
DNA (606bp) protein (202aa)
hypothetical protein Tax=Bradyrhizobium elkanii RepID=UPI00035CFE7E
Bradyrhizobium elkanii strain UASWS1015 Contig183, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46069.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_1642_12
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10710..11231)
DNA (522bp) protein (174aa)
(2Fe-2S)-binding domain protein Tax=Methylocystis sp. (strain SC2) RepID=J7QA86_METSZ
(2Fe-2S)-binding domain-containing protein
(2Fe-2S)-binding domain protein {ECO:0000313|EMBL:CCJ08622.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
PLM3_30_b1_sep16_scaffold_1642_13
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11228..14020)
DNA (2793bp) protein (931aa)
Aldehyde dehydrogenase (NAD+) Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H9R2_9BRAD
Aldehyde dehydrogenase (NAD+) {ECO:0000313|EMBL:ERF81493.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
PLM3_30_b1_sep16_scaffold_1642_14
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14680..15693
DNA (1014bp) protein (338aa)
Uncharacterized protein Tax=Methylobacterium sp. (strain 4-46) RepID=B0U974_METS4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA15345.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
PLM3_30_b1_sep16_scaffold_1642_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(15781..16794)
DNA (1014bp) protein (338aa)
Uncharacterized protein UPF0065 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM22_9FIRM
extra-cytoplasmic solute receptor family protein 92
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_30_b1_sep16_scaffold_1642_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(16791..18281)
DNA (1491bp) protein (497aa)
Tricarboxylate transport membrane protein Tax=Bradyrhizobiaceae RepID=F7QKU1_9BRAD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_30_b1_sep16_scaffold_1642_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(18285..18725)
DNA (441bp) protein (147aa)
Uncharacterized protein Tax=Rhizobium sp. PDO1-076 RepID=H4F278_9RHIZ
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_30_b1_sep16_scaffold_1642_18
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18766..20715)
DNA (1950bp) protein (650aa)
stcD; FAD/FMN-binding oxidoreductase (EC:1.-.-.-)
Oxidoreductase Tax=Saccharopolyspora erythraea D RepID=T2RQS3_SACER
Oxidoreductase {ECO:0000313|EMBL:EQD82440.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea D.;"
PLM3_30_b1_sep16_scaffold_1642_19
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20730..21098)
DNA (369bp) protein (123aa)
Acyl-CoA dehydrogenase Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TUY9_TISMK
mmgC; acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AFK56577.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
PLM3_30_b1_sep16_scaffold_1642_20
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21103..21693)
DNA (591bp) protein (197aa)
Acyl-CoA dehydrogenase Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TUY9_TISMK
mmgC; acyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_30_b1_sep16_scaffold_1642_21
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21707..22225)
DNA (519bp) protein (173aa)
MaoC-like dehydratase Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21QT3_RHOFD
MaoC-like protein dehydratase
MaoC-like dehydratase {ECO:0000313|EMBL:ABD71870.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
Displaying 21 items

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