ggKbase home page

PLM3_30_b1_sep16_scaffold_4166

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_4166_1
unknown

Not on your lists

comp(3..251)
DNA (249bp) protein (83aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_4166_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

673..1926
DNA (1254bp) protein (418aa)
Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|RuleBase:RU003981};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Aminomethyltransferase Tax=Microvirga sp. WSM3557 RepID=I4YQ02_9RHIZ
glycine cleavage system T protein
PLM3_30_b1_sep16_scaffold_4166_3
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1939..2313
DNA (375bp) protein (125aa)
Glycine cleavage system H protein Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=GCSH_XANP2
glycine cleavage system protein H
Glycine cleavage system H protein {ECO:0000255|HAMAP-Rule:MF_00272}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
PLM3_30_b1_sep16_scaffold_4166_4
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2318..2797
DNA (480bp) protein (160aa)
Putative redox protein, regulator of disulfide bond formation Tax=Microvirga sp. WSM3557 RepID=I4YQ04_9RHIZ
Peroxiredoxin {ECO:0000313|EMBL:KFG67340.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
redox protein
PLM3_30_b1_sep16_scaffold_4166_5
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2811..4154
DNA (1344bp) protein (448aa)
Probable glycine dehydrogenase (decarboxylating) subunit 1 {ECO:0000255|HAMAP-Rule:MF_00712}; EC=1.4.4.2 {ECO:0000255|HAMAP-Rule:MF_00712};; Glycine cleavage system P-protein subunit 1 {ECO:0000255|HAMAP-Rule:MF_00712}; Glycine decarboxylase subunit 1 {ECO:0000255|HAMAP-Rule:MF_00712}; Glycine dehydrogenase (aminomethyl-transferring) subunit 1 {ECO:0000255|HAMAP-Rule:MF_00712}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
Probable glycine dehydrogenase (decarboxylating) subunit 1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=GCSPA_AZOC5
glycine dehydrogenase subunit 1
PLM3_30_b1_sep16_scaffold_4166_6
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4151..5707
DNA (1557bp) protein (519aa)
Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|SAAS:SAAS00022796}; EC=1.4.4.2 {ECO:0000256|SAAS:SAAS00022796};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
glycine dehydrogenase subunit 2 Tax=Chelatococcus sp. GW1 RepID=UPI0002ECF1DA
glycine dehydrogenase subunit 2
PLM3_30_b1_sep16_scaffold_4166_7
bacterium YEK0313, Bacteria

Not on your lists

comp(5866..6837)
DNA (972bp) protein (324aa)
metallo-hydrolase Tax=Chelatococcus sp. GW1 RepID=UPI0002EA3B91
Putative quorum-quenching lactonase YtnP {ECO:0000313|EMBL:CEJ09881.1}; species="Bacteria.;" source="bacterium YEK0313.;"
beta-lactamase domain-containing protein
PLM3_30_b1_sep16_scaffold_4166_8
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6986..7453)
DNA (468bp) protein (156aa)
ATP synthase subunit b Tax=Rhodovulum sp. PH10 RepID=J9DDL1_9RHOB
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
H+-transporting two-sector ATPase subunit B/B'
PLM3_30_b1_sep16_scaffold_4166_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7529..8062)
DNA (534bp) protein (178aa)
ATP synthase subunit b 2 Tax=Rhodopseudomonas palustris PF2_RHOPA">RepID=ATPF2_RHOPA
H+transporting two-sector ATPase subunit B/B'
ATP synthase subunit b 2; ATP synthase F(0) sector subunit b 2; ATPase subunit I 2; F-type ATPase subunit b 2; Short=F-ATPase subunit b 2;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
PLM3_30_b1_sep16_scaffold_4166_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8133..8360)
DNA (228bp) protein (76aa)
F0F1 ATP synthase subunit C (EC:3.6.3.14)
H+transporting two-sector ATPase C subunit Tax=Bradyrhizobiaceae RepID=B3QF36_RHOPT
H+transporting two-sector ATPase C subunit {ECO:0000313|EMBL:ADU42638.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
PLM3_30_b1_sep16_scaffold_4166_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8405..9154)
DNA (750bp) protein (250aa)
F0F1 ATP synthase subunit A (EC:3.6.3.14)
ATP synthase subunit a Tax=Rhodopseudomonas palustris (strain BisB18) RepID=ATP6_RHOPB
ATP synthase subunit a {ECO:0000255|HAMAP-Rule:MF_01393}; ATP synthase F0 sector subunit a {ECO:0000255|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000255|HAMAP-Rule:MF_01393}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
PLM3_30_b1_sep16_scaffold_4166_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9191..9574)
DNA (384bp) protein (128aa)
hypothetical protein Tax=Afipia birgiae RepID=UPI0002D43700
Uncharacterized protein {ECO:0000313|EMBL:EKS34272.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
FoF1 ATP synthase subunit I
PLM3_30_b1_sep16_scaffold_4166_13
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9856..10314
DNA (459bp) protein (153aa)
hypothetical protein Tax=Bradyrhizobium elkanii RepID=UPI0002E345E8
Bradyrhizobium elkanii strain UASWS1015 Contig180, whole genome shotgun sequence {ECO:0000313|EMBL:KIU47361.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_4166_14
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10418..11368)
DNA (951bp) protein (317aa)
hypothetical protein Tax=Chelatococcus sp. GW1 RepID=UPI0002F2A9E4
Esterase/lipase {ECO:0000313|EMBL:EIM28738.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
alpha/beta hydrolase domain-containing protein
PLM3_30_b1_sep16_scaffold_4166_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11398..12720)
DNA (1323bp) protein (441aa)
TRAP dicarboxylate transporter, DctM subunit Tax=Nitratireductor indicus C115 RepID=K2PJS5_9RHIZ
TRAP dicarboxylate transporter, DctM subunit
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_30_b1_sep16_scaffold_4166_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12717..13241)
DNA (525bp) protein (175aa)
Uncharacterized protein Tax=Oceanicola batsensis HTCC2597 RepID=A3TXF0_9RHOB
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_30_b1_sep16_scaffold_4166_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13263..14339)
DNA (1077bp) protein (359aa)
TRAP-type C4-dicarboxylate transport system, periplasmic component Tax=Rhodovulum sp. PH10 RepID=J6LKL3_9RHOB
TRAP dicarboxylate transporter subunit DctP
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_30_b1_sep16_scaffold_4166_18
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(14474..14701)
DNA (228bp) protein (76aa)
Alanine racemase domain protein Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NGT7_ROSCS
alanine racemase domain-containing protein
Alanine racemase domain protein {ECO:0000313|EMBL:ABU56684.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
Displaying 18 items

View Taxonomy