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PLM3_30_b1_sep16_scaffold_4962

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_4962_1
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..803)
DNA (801bp) protein (267aa)
Uncharacterized protein Tax=Bradyrhizobium sp. STM 3809 RepID=H0SYA2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD94329.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
transmembrane protein
PLM3_30_b1_sep16_scaffold_4962_2
unknown

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comp(807..1460)
DNA (654bp) protein (218aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_4962_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1470..2480)
DNA (1011bp) protein (337aa)
acyl-CoA dehydrogenase (EC:1.3.99.-)
hypothetical protein Tax=Bradyrhizobium japonicum RepID=UPI0003735F04
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_30_b1_sep16_scaffold_4962_4
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2766..3491)
DNA (726bp) protein (242aa)
Acetoacetyl CoA reductase Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89NV8_BRADU
phbB; acetoacetyl CoA reductase
Acetoacetyl CoA reductase {ECO:0000313|EMBL:BAR60958.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
PLM3_30_b1_sep16_scaffold_4962_5
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3628..4803)
DNA (1176bp) protein (392aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ABA06308.1}; EC=2.3.1.9 {ECO:0000313|EMBL:ABA06308.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Acetyl-CoA acetyltransferase Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SN33_NITWN
PLM3_30_b1_sep16_scaffold_4962_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5051..5248
DNA (198bp) protein (66aa)
hypothetical protein Tax=Citromicrobium sp. JLT1363 RepID=UPI000225EA2E
PHB/PHA accumulation regulator DNA-binding domain protein {ECO:0000313|EMBL:AKH41588.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
phaR; polyhydroxyalkanoate synthesis repressor PhaR
PLM3_30_b1_sep16_scaffold_4962_7
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5250..5852
DNA (603bp) protein (201aa)
PhbF Tax=Rhodovulum sp. PH10 RepID=J6JC73_9RHOB
PhbF {ECO:0000313|EMBL:EJW12870.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
putative polyhydroxyalkanoate synthesis repressor PhaR-like
PLM3_30_b1_sep16_scaffold_4962_8
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5949..7670)
DNA (1722bp) protein (574aa)
Diguanylate cyclase Tax=Rhodovulum sp. PH10 RepID=J6UHB8_9RHOB
Diguanylate cyclase {ECO:0000313|EMBL:EJW12869.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
putative diguanylate cyclase (GGDEF)/phosphodiesterase
PLM3_30_b1_sep16_scaffold_4962_9
unknown

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7883..8167
DNA (285bp) protein (95aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_4962_10
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8178..8843)
DNA (666bp) protein (222aa)
GntR family transcriptional regulator Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003712CD3
Putative regulatory protein, GntR familiy {ECO:0000313|EMBL:EAS49673.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
GntR family transcriptional regulator
PLM3_30_b1_sep16_scaffold_4962_11
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8863..9984
DNA (1122bp) protein (374aa)
ABC transporter substrate-binding protein Tax=Mesorhizobium sp. WSM4349 RepID=UPI000379D78B
Tripartite ATP-independent periplasmic transporter solute receptor, DctP family {ECO:0000313|EMBL:EIG58701.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
TRAP dicarboxylate transporter, DctP subunit
PLM3_30_b1_sep16_scaffold_4962_12
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10012..10521
DNA (510bp) protein (170aa)
C4-dicarboxylate ABC transporter permease Tax=Mesorhizobium sp. WSM4349 RepID=UPI0003624888
tripartite ATP-independent periplasmic transporter DctQ
Tripartite ATP-independent periplasmic transporter DctQ {ECO:0000313|EMBL:BAL76857.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
PLM3_30_b1_sep16_scaffold_4962_13
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10526..11734
DNA (1209bp) protein (403aa)
TRAP dicarboxylate transporter DctM subunit Tax=Bradyrhizobium sp. S23321 RepID=I0G7W9_9BRAD
TRAP dicarboxylate transporter subunit DctM
TRAP dicarboxylate transporter DctM subunit {ECO:0000313|EMBL:BAL76856.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
PLM3_30_b1_sep16_scaffold_4962_14
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11772..12254
DNA (483bp) protein (161aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
3-dehydroquinate dehydratase Tax=Bradyrhizobium sp. WSM1253 RepID=I2QFZ2_9BRAD
3-dehydroquinate dehydratase
PLM3_30_b1_sep16_scaffold_4962_15
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12265..12384
DNA (120bp) protein (40aa)
Uncharacterized protein Tax=Bradyrhizobium sp. S23321 RepID=I0G7W7_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL76854.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
Displaying 15 items

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