ggKbase home page

PLM3_30_b1_sep16_scaffold_5164

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_5164_1
unknown

Not on your lists

1..177
DNA (177bp) protein (59aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_5164_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(185..1390)
DNA (1206bp) protein (402aa)
Extracellular ligand-binding receptor Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VI47_RHOPX
extracellular ligand-binding receptor
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ADU41943.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
PLM3_30_b1_sep16_scaffold_5164_3
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1526..2440
DNA (915bp) protein (305aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
rRNA small subunit methyltransferase I Tax=Rhodovulum sp. PH10 RepID=J6JB61_9RHOB
hypothetical protein
PLM3_30_b1_sep16_scaffold_5164_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2424..2816
DNA (393bp) protein (131aa)
UPF0102 protein RPC_0320 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Y320_RHOPB
hypothetical protein
UPF0102 protein RPC_0320 {ECO:0000255|HAMAP-Rule:MF_00048}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
PLM3_30_b1_sep16_scaffold_5164_5
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3057..3800
DNA (744bp) protein (248aa)
Blr7228 protein Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89E59_BRADU
hypothetical protein
Blr7228 protein {ECO:0000313|EMBL:BAC52493.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
PLM3_30_b1_sep16_scaffold_5164_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4023..4244)
DNA (222bp) protein (74aa)
copper-exporting ATPase (EC:3.6.3.4)
Copper-exporting ATPase Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F4U0_ACIC5
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_30_b1_sep16_scaffold_5164_7
unknown

Not on your lists

comp(4287..4517)
DNA (231bp) protein (77aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_5164_8
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(4804..5250)
DNA (447bp) protein (149aa)
Sigma-70 region 2 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NW06_9FIRM
ECF subfamily RNA polymerase sigma-24 factor
Tax=RBG_16_Chloroflexi_57_11_curated
PLM3_30_b1_sep16_scaffold_5164_9
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5530..6627)
DNA (1098bp) protein (366aa)
Adenylate cyclase 3 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D735_BRAJP
Adenylate cyclase {ECO:0000313|EMBL:KGT72972.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
adenylate cyclase 3
Displaying 9 items

View Taxonomy