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PLM3_30_b1_sep16_scaffold_2397

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_2397_1
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..336
DNA (336bp) protein (112aa)
Elongation factor G Tax=Rhodovulum sp. PH10 RepID=J6LH73_9RHOB
translation elongation factor G
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
PLM3_30_b1_sep16_scaffold_2397_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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378..1433
DNA (1056bp) protein (352aa)
tuf; elongation factor Tu (EC:3.6.5.3)
elongation factor Tu Tax=Methyloferula stellata RepID=UPI00036CD413
Elongation factor Tu {ECO:0000255|HAMAP-Rule:MF_00118}; Short=EF-Tu {ECO:0000255|HAMAP-Rule:MF_00118};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
PLM3_30_b1_sep16_scaffold_2397_3
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1453..1761
DNA (309bp) protein (103aa)
30S ribosomal protein S10 Tax=Bradyrhizobiaceae RepID=RS10_BRADU
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000255|HAMAP-Rule:MF_00508}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
PLM3_30_b1_sep16_scaffold_2397_4
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1792..2517
DNA (726bp) protein (242aa)
50S ribosomal protein L3 Tax=Afipia felis ATCC 53690 RepID=K8NB37_AFIFE
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
rplC; 50S ribosomal protein L3
PLM3_30_b1_sep16_scaffold_2397_5
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2517..3137
DNA (621bp) protein (207aa)
50S ribosomal protein L4 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=RL4_RHOP5
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
rplD; 50S ribosomal protein L4
PLM3_30_b1_sep16_scaffold_2397_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3134..3436
DNA (303bp) protein (101aa)
50S ribosomal protein L23 Tax=Rhodopseudomonas palustris RepID=RL23_RHOPA
rplW; 50S ribosomal protein L23
50S ribosomal protein L23 {ECO:0000255|HAMAP-Rule:MF_01369}; RRP-L23; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
PLM3_30_b1_sep16_scaffold_2397_7
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3450..4286
DNA (837bp) protein (279aa)
50S ribosomal protein L2 Tax=Afipia sp. 1NLS2 RepID=D6VAE1_9BRAD
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
50S ribosomal protein L2
PLM3_30_b1_sep16_scaffold_2397_8
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4298..4597
DNA (300bp) protein (100aa)
30S ribosomal protein S19 Tax=Methyloferula stellata RepID=UPI00035E8314
rpsS; 30S ribosomal protein S19
30S ribosomal protein S19 {ECO:0000255|HAMAP-Rule:MF_00531}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
PLM3_30_b1_sep16_scaffold_2397_9
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4609..5004
DNA (396bp) protein (132aa)
50S ribosomal protein L22 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IAR4_AZOC5
50S ribosomal protein L22
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
PLM3_30_b1_sep16_scaffold_2397_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5015..5713
DNA (699bp) protein (233aa)
30S ribosomal protein S3 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=RS3_RHOPB
rpsC; 30S ribosomal protein S3
30S ribosomal protein S3 {ECO:0000255|HAMAP-Rule:MF_01309}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
PLM3_30_b1_sep16_scaffold_2397_11
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5731..6144
DNA (414bp) protein (138aa)
50S ribosomal protein L16 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HJM9_9BRAD
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
rplP; 50S ribosomal protein L16
PLM3_30_b1_sep16_scaffold_2397_12
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6149..6352
DNA (204bp) protein (68aa)
50S ribosomal protein L29 Tax=Nitratireductor indicus C115 RepID=K2NLL5_9RHIZ
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
50S ribosomal protein L29
PLM3_30_b1_sep16_scaffold_2397_13
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6363..6611
DNA (249bp) protein (83aa)
30S ribosomal protein S17 Tax=Rhodovulum sp. PH10 RepID=J6UF18_9RHOB
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
rpsQ; 30S ribosomal protein S17
PLM3_30_b1_sep16_scaffold_2397_14
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6654..7022
DNA (369bp) protein (123aa)
50S ribosomal protein L14 Tax=Bradyrhizobiaceae RepID=RL14_RHOPB
rplN; 50S ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
PLM3_30_b1_sep16_scaffold_2397_15
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7022..7336
DNA (315bp) protein (105aa)
50S ribosomal protein L24 Tax=Rhodovulum sp. PH10 RepID=J6UG23_9RHOB
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
rplX; 50S ribosomal protein L24
PLM3_30_b1_sep16_scaffold_2397_16
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7329..8015
DNA (687bp) protein (229aa)
50S ribosomal protein L5 Tax=Methylocystis sp. (strain SC2) RepID=J7QN34_METSZ
rplE; 50S ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000313|EMBL:CCJ06718.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
PLM3_30_b1_sep16_scaffold_2397_17
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8062..8367
DNA (306bp) protein (102aa)
30S ribosomal protein S14 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=RS14_BEII9
rpsN; 30S ribosomal protein S14
30S ribosomal protein S14 {ECO:0000255|HAMAP-Rule:MF_00537}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
PLM3_30_b1_sep16_scaffold_2397_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8378..8776
DNA (399bp) protein (133aa)
30S ribosomal protein S8 Tax=Rhodopseudomonas palustris RepID=RS8_RHOPA
rpsH; 30S ribosomal protein S8
30S ribosomal protein S8 {ECO:0000255|HAMAP-Rule:MF_01302}; RRP-S8; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
PLM3_30_b1_sep16_scaffold_2397_19
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8800..9333
DNA (534bp) protein (178aa)
50S ribosomal protein L6 Tax=Rhodovulum sp. PH10 RepID=J6J935_9RHOB
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
rplF; 50S ribosomal protein L6
PLM3_30_b1_sep16_scaffold_2397_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9345..9707
DNA (363bp) protein (121aa)
50S ribosomal protein L18 Tax=Afipia birgiae RepID=UPI00031CF0C5
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rplR; 50S ribosomal protein L18
PLM3_30_b1_sep16_scaffold_2397_21
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9720..10289
DNA (570bp) protein (190aa)
30S ribosomal protein S5 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=RS5_RHOP5
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
rpsE; 30S ribosomal protein S5
PLM3_30_b1_sep16_scaffold_2397_22
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10330..10521
DNA (192bp) protein (64aa)
50S ribosomal protein L30 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TKA9_9BRAD
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
50S ribosomal subunit protein L30
PLM3_30_b1_sep16_scaffold_2397_23
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10641..10973
DNA (333bp) protein (111aa)
50S ribosomal protein L15 Tax=Oligotropha carboxidovorans RepID=RL15_OLICO
rplO; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000255|HAMAP-Rule:MF_01341}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
PLM3_30_b1_sep16_scaffold_2397_24
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11015..12346
DNA (1332bp) protein (444aa)
preprotein translocase subunit SecY Tax=Bradyrhizobium japonicum RepID=UPI00036BF5A8
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
preprotein translocase subunit SecY
PLM3_30_b1_sep16_scaffold_2397_25
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12343..13158
DNA (816bp) protein (272aa)
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Adenylate kinase Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ELK6_BRASB
PLM3_30_b1_sep16_scaffold_2397_26
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13345..13713
DNA (369bp) protein (123aa)
30S ribosomal protein S13 Tax=Afipia felis ATCC 53690 RepID=K8NH86_AFIFE
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
rpsM; 30S ribosomal protein S13
PLM3_30_b1_sep16_scaffold_2397_27
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13785..14177
DNA (393bp) protein (131aa)
30S ribosomal protein S11 Tax=Nitrobacter RepID=RS11_NITWN
30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000255|HAMAP-Rule:MF_01310}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
PLM3_30_b1_sep16_scaffold_2397_28
Streptomyces sp. AcH 505, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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14273..15301
DNA (1029bp) protein (343aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha Tax=Rhodopseudomonas palustris (strain BisA53) RepID=RPOA_RHOP5
PLM3_30_b1_sep16_scaffold_2397_29
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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15357..15782
DNA (426bp) protein (142aa)
50S ribosomal protein L17 Tax=Rhodovulum sp. PH10 RepID=J6J923_9RHOB
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
50S ribosomal protein L17
PLM3_30_b1_sep16_scaffold_2397_30
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

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15928..17199
DNA (1272bp) protein (424aa)
Esterase/lipase Tax=Sphingobium sp. AP49 RepID=J2KWV4_9SPHN
alpha/beta hydrolase fold domain-containing protein
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
Displaying 30 items

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