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PLM3_30_b1_sep16_scaffold_2876

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_2876_1
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..214)
DNA (213bp) protein (71aa)
Uncharacterized protein Tax=Bradyrhizobium sp. WSM1253 RepID=I2QH85_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:AHY54487.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
RES domain-containing protein
PLM3_30_b1_sep16_scaffold_2876_2
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(269..706)
DNA (438bp) protein (146aa)
Putative toxin-antitoxin system antitoxin component, TIGR02293 family Tax=Bradyrhizobium sp. WSM1253 RepID=I2QH86_9BRAD
Putative toxin-antitoxin system antitoxin component, TIGR02293 family {ECO:0000313|EMBL:EIG59142.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
Toxin-antitoxin system antitoxin component, TIGR02293 family
PLM3_30_b1_sep16_scaffold_2876_3
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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923..3940
DNA (3018bp) protein (1006aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase Tax=Rhodovulum sp. PH10 RepID=J6UB18_9RHOB
PLM3_30_b1_sep16_scaffold_2876_4
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3942..4454
DNA (513bp) protein (171aa)
lspA; lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
Lipoprotein signal peptidase Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4Z0P5_BRASO
PLM3_30_b1_sep16_scaffold_2876_5
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4529..5242
DNA (714bp) protein (238aa)
Uncharacterized protein Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N1N0_RHOPA
Uncharacterized protein {ECO:0000313|EMBL:KGJ63866.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_2876_6
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5310..6668
DNA (1359bp) protein (453aa)
Protease Tax=Rhodovulum sp. PH10 RepID=J6IWS0_9RHOB
Zinc protease {ECO:0000313|EMBL:ETR78542.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
protease
PLM3_30_b1_sep16_scaffold_2876_7
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6665..7987
DNA (1323bp) protein (441aa)
Uncharacterized protein Tax=Afipia felis ATCC 53690 RepID=K8NM07_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29479.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
Zn-dependent protease
PLM3_30_b1_sep16_scaffold_2876_8
unknown

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comp(8401..8649)
DNA (249bp) protein (83aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2876_9
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8809..9264
DNA (456bp) protein (152aa)
Glucose-6-phosphate isomerase {ECO:0000256|RuleBase:RU000612, ECO:0000256|SAAS:SAAS00031329}; EC=5.3.1.9 {ECO:0000256|RuleBase:RU000612, ECO:0000256|SAAS:SAAS00031329};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
Glucose-6-phosphate isomerase Tax=Lutibaculum baratangense AMV1 RepID=V4RWW3_9RHIZ
glucose-6-phosphate isomerase
PLM3_30_b1_sep16_scaffold_2876_10
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9272..9697
DNA (426bp) protein (142aa)
hypothetical protein Tax=Chelatococcus sp. GW1 RepID=UPI0002DB5FC2
PrfB protein {ECO:0000313|EMBL:BAQ45238.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
class I peptide chain release factor
PLM3_30_b1_sep16_scaffold_2876_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9770..11563
DNA (1794bp) protein (598aa)
DNA mismatch repair protein MutL Tax=Bradyrhizobium sp. YR681 RepID=J2WGC2_9BRAD
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
DNA mismatch repair protein
PLM3_30_b1_sep16_scaffold_2876_12
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11706..11921)
DNA (216bp) protein (72aa)
Putative methyltransferase Tax=Oligotropha carboxidovorans RepID=B6JIV2_OLICO
putative methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:AEI05594.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Displaying 12 items

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