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PLM3_30_b1_sep16_scaffold_2933

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_2933_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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124..819
DNA (696bp) protein (232aa)
Putative 3-oxoacyl-(Acyl-carrier-protein) reductase Tax=Bradyrhizobium sp. STM 3843 RepID=H0TX38_9BRAD
Oxidoreductase {ECO:0000313|EMBL:KIZ42387.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
3-oxoacyl-ACP reductase
PLM3_30_b1_sep16_scaffold_2933_2
unknown

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comp(886..1074)
DNA (189bp) protein (63aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2933_3
unknown

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1833..2375
DNA (543bp) protein (181aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2933_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2406..3476)
DNA (1071bp) protein (357aa)
Diguanylate cyclase Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137P7_RHOPS
GGDEF domain-containing protein
Diguanylate cyclase {ECO:0000313|EMBL:ABE39692.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
PLM3_30_b1_sep16_scaffold_2933_5
unknown

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3692..3994
DNA (303bp) protein (101aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2933_6
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

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4137..4961
DNA (825bp) protein (275aa)
hypothetical protein Tax=Afipia birgiae RepID=UPI0002F229B3
tctC; extracytoplasmic binding receptor
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM3_30_b1_sep16_scaffold_2933_7
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5136..6203
DNA (1068bp) protein (356aa)
Putative uncharacterized protein Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SRX6_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA04965.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
PLM3_30_b1_sep16_scaffold_2933_8
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6185..8146
DNA (1962bp) protein (654aa)
carbamoyl-phosphate synthase subunit L Tax=Chelatococcus sp. GW1 RepID=UPI000305F6C9
Carbamoyl-phosphate synthase subunit L {ECO:0000313|EMBL:KFG68353.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
carbamoyl-phosphate synthase L chain ATP-binding
PLM3_30_b1_sep16_scaffold_2933_9
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8224..8709
DNA (486bp) protein (162aa)
Uncharacterized protein Tax=Rhodovulum sp. PH10 RepID=J9DX94_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW09714.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_2933_10
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8768..9943
DNA (1176bp) protein (392aa)
Uncharacterized protein Tax=Bradyrhizobium sp. ORS 375 RepID=H0SR01_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD96628.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
branched-chain amino acid ABC transporter
PLM3_30_b1_sep16_scaffold_2933_11
Burkholderia andropogonis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10006..10938
DNA (933bp) protein (311aa)
catechol 1,2-dioxygenase Tax=Pusillimonas noertemannii RepID=UPI0002DD2A15
Catechol 1,2-dioxygenase {ECO:0000313|EMBL:KKB62043.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia andropogonis.;"
intradiol ring-cleavage dioxygenase
PLM3_30_b1_sep16_scaffold_2933_12
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11031..11912)
DNA (882bp) protein (294aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
pantoate--beta-alanine ligase Tax=Bradyrhizobium elkanii RepID=UPI00036EE1A2
panC; pantoate--beta-alanine ligase
PLM3_30_b1_sep16_scaffold_2933_13
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12061..13035
DNA (975bp) protein (325aa)
Uncharacterized protein Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EKW2_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ36806.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
PLM3_30_b1_sep16_scaffold_2933_14
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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13073..13810
DNA (738bp) protein (246aa)
Uncharacterized protein Tax=Rhodovulum sp. PH10 RepID=J6UAX6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW09739.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_2933_15
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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13813..14511
DNA (699bp) protein (233aa)
Heat shock protein Tax=Rhodovulum sp. PH10 RepID=J6IWK2_9RHOB
Heat shock protein {ECO:0000313|EMBL:EJW09740.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_2933_16
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14625..16181)
DNA (1557bp) protein (519aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Putative D-alanyl-D-alanine carboxypeptidase (Peptidase S11)(DD-carboxypeptidase) Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EKV8_BRASB
Peptidase M15 {ECO:0000313|EMBL:ETR75488.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
PLM3_30_b1_sep16_scaffold_2933_17
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16548..16886
DNA (339bp) protein (113aa)
Phasin Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9M8_STAND
phasin family protein
Phasin {ECO:0000313|EMBL:ADH88804.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
PLM3_30_b1_sep16_scaffold_2933_18
unknown

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comp(17111..17368)
DNA (258bp) protein (86aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2933_19
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17628..18719)
DNA (1092bp) protein (364aa)
Uncharacterized protein Tax=Rhizobium mesoamericanum STM3625 RepID=K0PP20_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCM75608.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_2933_20
unknown

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comp(19023..19127)
DNA (105bp) protein (35aa)

This feature has no annotations

Displaying 20 items

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