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PLM3_30_b1_sep16_scaffold_8659

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_8659_1
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2..616
DNA (615bp) protein (205aa)
ABC-type branched-chain amino acid transport systems periplasmic component-like protein Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F5Z1_VERMA
branched-chain amino acid ABC transporter substrate-binding protein
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM3_30_b1_sep16_scaffold_8659_2
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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722..1441
DNA (720bp) protein (240aa)
hypothetical protein Tax=Brevibacillus sp. phR RepID=UPI000317851A
inner-membrane translocator
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM3_30_b1_sep16_scaffold_8659_3
Natronorubrum tibetense, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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1441..2175
DNA (735bp) protein (245aa)
ABC transporter Tax=Natronorubrum tibetense GA33 RepID=L9VMV5_9EURY
ABC transporter {ECO:0000313|EMBL:ELY38396.1}; species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natronorubrum tibetense GA33.;"
livG4; ABC-type transport system ATP-binding protein (probable substrate branched-chain amino acids)
PLM3_30_b1_sep16_scaffold_8659_4
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

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2172..2903
DNA (732bp) protein (244aa)
Putative high-affinity branched-chain amino acid transport ATP-binding protein bin=GWC2_Chloroflexi_49_37 species=Roseobacter litoralis genus=Roseobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
ABC transporter-like protein
Tax=GWC2_Chloroflexi_49_37_curated
PLM3_30_b1_sep16_scaffold_8659_5
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2888..3859
DNA (972bp) protein (324aa)
hypothetical protein Tax=Brevibacillus sp. phR RepID=UPI0002F60553
inner-membrane translocator
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM3_30_b1_sep16_scaffold_8659_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(4192..5211)
DNA (1020bp) protein (340aa)
Zn-dependent dipeptidase, microsomal dipeptidase {ECO:0000313|EMBL:CDM65778.1}; EC=3.4.13.19 {ECO:0000313|EMBL:CDM65778.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
membrane dipeptidase (EC:3.4.13.19)
Membrane dipeptidase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YB4_SOLUE
PLM3_30_b1_sep16_scaffold_8659_7
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5273..6235)
DNA (963bp) protein (321aa)
Uncharacterized protein bin=GWC2_Syntrophus__56_31 species=Bradyrhizobium sp. STM 3843 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
extra-cytoplasmic solute receptor
Tax=GWC2_Syntrophus_56_31_curated
PLM3_30_b1_sep16_scaffold_8659_8
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6255..6776)
DNA (522bp) protein (174aa)
histidine kinase Tax=Bradyrhizobium japonicum RepID=UPI00037C7175
Histidine kinase {ECO:0000313|EMBL:KJC62245.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
histidine kinase
PLM3_30_b1_sep16_scaffold_8659_9
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6779..7693)
DNA (915bp) protein (305aa)
BugT protein Tax=Ralstonia sp. PBA RepID=I9KRV2_9RALS
BugT protein {ECO:0000313|EMBL:EIZ02920.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_8659_10
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7994..8992
DNA (999bp) protein (333aa)
hypothetical protein Tax=SAR324 cluster bacterium SCGC AB-629-J17 RepID=UPI00036AA716
C4-dicarboxylate transport system substrate-binding protein {ECO:0000313|EMBL:EJW10305.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
TRAP-type C4-dicarboxylate transport system, periplasmic component
PLM3_30_b1_sep16_scaffold_8659_11
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9000..9512
DNA (513bp) protein (171aa)
TRAP-type C4-dicarboxylate transport system, small permease component Tax=Rhizobium sp. RepID=L0NL74_RHISP
TRAP-type C4-dicarboxylate transport system, small permease component {ECO:0000313|EMBL:CCF21820.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
TRAP-type C4-dicarboxylate transport system, small permease component
PLM3_30_b1_sep16_scaffold_8659_12

Not on your lists

9509..10813
DNA (1305bp) protein (435aa)
hypothetical protein Tax=SAR324 cluster bacterium SCGC AB-629-J17 RepID=UPI00036F07B6
Uncharacterized protein {ECO:0000313|EMBL:KKN63137.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
TRAP dicarboxylate transporter subunit DctM
PLM3_30_b1_sep16_scaffold_8659_13
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10902..11129)
DNA (228bp) protein (76aa)
D-amino acid dehydrogenase small subunit (EC:1.4.99.1)
D-amino-acid dehydrogenase Tax=Thalassospira profundimaris WP0211 RepID=K2KRA7_9PROT
D-amino-acid dehydrogenase {ECO:0000313|EMBL:EKF08224.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
Displaying 13 items

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