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PLM3_30_b1_sep16_scaffold_6345

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_6345_1
unknown

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comp(2..190)
DNA (189bp) protein (63aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_6345_2
Roseobacter sp. SK209-2-6, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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308..1234
DNA (927bp) protein (309aa)
Transcriptional regulator, LysR family protein Tax=Roseobacter sp. SK209-2-6 RepID=A4EZ90_9RHOB
Transcriptional regulator, LysR family protein {ECO:0000313|EMBL:EBA15058.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. SK209-2-6.;"
LysR family transcriptional regulator
PLM3_30_b1_sep16_scaffold_6345_3
Leuconostoc kimchii, Leuconostoc, Lactobacillales, Bacilli, Firmicutes, Bacteria

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1251..1568
DNA (318bp) protein (106aa)
Uncharacterized protein Tax=Leuconostoc RepID=D5T347_LEUKI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG40696.1}; species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Leuconostocaceae; Leuconostoc.;" source="Leuconostoc kimchii (strain IMSNU 11154 / KCTC 2386 / IH25).;"
PLM3_30_b1_sep16_scaffold_6345_4
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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1716..2333
DNA (618bp) protein (206aa)
Probable NADH dehydrogenase I chain J transmembrane protein Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IY00_POLGS
nuoJ; NADH dehydrogenase I subunit J transmembrane protein
Probable NADH dehydrogenase I chain J transmembrane protein {ECO:0000313|EMBL:ADZ70503.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
PLM3_30_b1_sep16_scaffold_6345_5
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2330..2638
DNA (309bp) protein (103aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
nuoK; NADH dehydrogenase subunit K (EC:1.6.5.3)
NADH-quinone oxidoreductase Tax=Afipia birgiae RepID=UPI0002F53AC5
PLM3_30_b1_sep16_scaffold_6345_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2647..4557
DNA (1911bp) protein (637aa)
NADH dehydrogenase subunit L (EC:1.6.99.5)
Proton-translocating NADH-quinone oxidoreductase, chain L {ECO:0000313|EMBL:ABD87967.1}; EC=1.6.99.5 {ECO:0000313|EMBL:ABD87967.1};; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Proton-translocating NADH-quinone oxidoreductase, chain L Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q215G9_RHOPB
PLM3_30_b1_sep16_scaffold_6345_7
unknown

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comp(4793..4906)
DNA (114bp) protein (38aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_6345_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5152..6045
DNA (894bp) protein (298aa)
Proton-translocating NADH-quinone oxidoreductase, chain M {ECO:0000313|EMBL:ABJ06473.1}; EC=1.6.99.5 {ECO:0000313|EMBL:ABJ06473.1};; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
NADH:ubiquinone oxidoreductase subunit M Tax=Afipia birgiae RepID=UPI00035C7D05
NADH dehydrogenase subunit M
PLM3_30_b1_sep16_scaffold_6345_9
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6042..7517
DNA (1476bp) protein (492aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
NADH dehydrogenase subunit N (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit N Tax=Rhodovulum sp. PH10 RepID=J6J6Y3_9RHOB
PLM3_30_b1_sep16_scaffold_6345_10
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7480..8247
DNA (768bp) protein (256aa)
Biotin-protein ligase Tax=Rhodovulum sp. PH10 RepID=J6UE65_9RHOB
Biotin-protein ligase {ECO:0000313|EMBL:EJW11841.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
biotin--acetyl-CoA-carboxylase ligase
PLM3_30_b1_sep16_scaffold_6345_11
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8247..9914
DNA (1668bp) protein (556aa)
Metallo-beta-lactamase family protein, RNA-specific Tax=Rhodovulum sp. PH10 RepID=J5PMV7_9RHOB
Metallo-beta-lactamase family protein, RNA-specific {ECO:0000313|EMBL:EJW11842.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
beta-lactamase-like
PLM3_30_b1_sep16_scaffold_6345_12
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9939..10343
DNA (405bp) protein (135aa)
Methylmalonyl-CoA epimerase {ECO:0000313|EMBL:ABS69837.1}; EC=5.1.99.1 {ECO:0000313|EMBL:ABS69837.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Methylmalonyl-CoA epimerase Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IP91_XANP2
methylmalonyl-CoA epimerase
PLM3_30_b1_sep16_scaffold_6345_13
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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10430..10702
DNA (273bp) protein (91aa)
Uncharacterized protein Tax=Rhodovulum sp. PH10 RepID=J6UF78_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW11844.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
Displaying 13 items

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