ggKbase home page

PLM3_30_b1_sep16_scaffold_4194

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_4194_1
unknown

Not on your lists

comp(1..168)
DNA (168bp) protein (56aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_4194_2
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(284..757)
DNA (474bp) protein (158aa)
Uncharacterized protein {ECO:0000313|EMBL:KIC95343.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
PLM3_30_b1_sep16_scaffold_4194_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1105..2250
DNA (1146bp) protein (382aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
DNA polymerase IV Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQL3_NIAKG
DNA polymerase IV
PLM3_30_b1_sep16_scaffold_4194_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2384..3028
DNA (645bp) protein (215aa)
1-Cys peroxiredoxin {ECO:0000313|EMBL:AEW03262.1}; EC=1.11.1.15 {ECO:0000313|EMBL:AEW03262.1};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
1-Cys peroxiredoxin Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQL5_NIAKG
1-Cys peroxiredoxin
PLM3_30_b1_sep16_scaffold_4194_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3478..3882)
DNA (405bp) protein (135aa)
Ribosome maturation factor RimM Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQL0_NIAKG
16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_4194_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(4156..4614)
DNA (459bp) protein (153aa)
30S ribosomal protein S16 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQK9_NIAKG
30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_4194_7
unknown

Not on your lists

comp(4628..4729)
DNA (102bp) protein (34aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_4194_8
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(4729..6060)
DNA (1332bp) protein (444aa)
Signal recognition particle protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQK8_NIAKG
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
signal recognition particle subunit FFH/SRP54 (srp54)
PLM3_30_b1_sep16_scaffold_4194_9
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(6258..6614)
DNA (357bp) protein (119aa)
S23 ribosomal Tax=Winogradskyella psychrotolerans RS-3 RepID=S7VVZ3_9FLAO
30S ribosomal protein S23 {ECO:0000313|EMBL:EZH71784.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
S23 ribosomal protein
PLM3_30_b1_sep16_scaffold_4194_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6936..7811)
DNA (876bp) protein (292aa)
RNA polymerase, sigma 70 subunit, RpoD subfamily Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQK7_NIAKG
RpoD subfamily RNA polymerase sigma-70 subunit
RNA polymerase, sigma 70 subunit, RpoD subfamily {ECO:0000313|EMBL:AEW03254.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_4194_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8128..8511
DNA (384bp) protein (128aa)
Activator of HSP90 ATPase 1 family protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQK6_NIAKG
activator of HSP90 ATPase 1 family protein
Activator of HSP90 ATPase 1 family protein {ECO:0000313|EMBL:AEW03253.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_4194_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8508..9119)
DNA (612bp) protein (204aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQK5_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW03252.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_4194_13
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9148..10575
DNA (1428bp) protein (476aa)
Permease YjgP/YjgQ family protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQK4_NIAKG
Permease {ECO:0000313|EMBL:KIC90571.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
YjgP/YjgQ family permease
PLM3_30_b1_sep16_scaffold_4194_14
unknown

Not on your lists

10622..10759
DNA (138bp) protein (46aa)

This feature has no annotations

Displaying 14 items

View Taxonomy