ggKbase home page

PLM3_30_b1_sep16_scaffold_4714

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_4714_1
Flavobacterium hibernum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3..344)
DNA (342bp) protein (114aa)
Short-chain dehydrogenase/reductase SDR Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FCD9_FLAJ1
Strain DSM 12611 Contig02, whole genome shotgun sequence {ECO:0000313|EMBL:KIO54537.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
short-chain dehydrogenase/reductase SDR
PLM3_30_b1_sep16_scaffold_4714_2
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(529..1818)
DNA (1290bp) protein (430aa)
Fucose permease Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GP39_9SPHI
Fucose permease {ECO:0000313|EMBL:EOR93300.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
L-fucose transporter
PLM3_30_b1_sep16_scaffold_4714_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1829..2167)
DNA (339bp) protein (113aa)
hypothetical protein Tax=Niabella aurantiaca RepID=UPI000379EF42
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF15339.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
PLM3_30_b1_sep16_scaffold_4714_4
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2177..3079)
DNA (903bp) protein (301aa)
D-mannonate dehydratase (EC:4.2.1.8)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00106}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
Mannonate dehydratase Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S7B8_PEDSD
PLM3_30_b1_sep16_scaffold_4714_5
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3094..3345)
DNA (252bp) protein (84aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00106}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
mannonate dehydratase (EC:4.2.1.8)
Mannonate dehydratase Tax=Fibrisoma limi BUZ 3 RepID=I2GLW8_9BACT
PLM3_30_b1_sep16_scaffold_4714_6
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3432..4295)
DNA (864bp) protein (288aa)
Contig31, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77661.1}; EC=1.1.1.131 {ECO:0000313|EMBL:KIO77661.1};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
Short-chain dehydrogenase/reductase SDR Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XSG0_PEDHD
short-chain dehydrogenase/reductase SDR
PLM3_30_b1_sep16_scaffold_4714_7
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4501..5220)
DNA (720bp) protein (240aa)
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; EC=5.3.1.17 {ECO:0000256|HAMAP-Rule:MF_00687};; 5-keto-4-deoxyuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; DKI isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
5-keto-4-deoxyuronate isomerase Tax=Cytophagales str. B6 RepID=UPI0003B43704
4-deoxy-L-threo-5-hexosulose-uronateketol-isomer ase
PLM3_30_b1_sep16_scaffold_4714_8
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5271..6929)
DNA (1659bp) protein (553aa)
Altronate dehydratase {ECO:0000313|EMBL:ADZ77201.1}; EC=4.2.1.7 {ECO:0000313|EMBL:ADZ77201.1};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
altronate hydrolase Tax=Cytophagales str. B6 RepID=UPI0003B32FD9
altronate dehydratase
PLM3_30_b1_sep16_scaffold_4714_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7140..8009
DNA (870bp) protein (290aa)
Transcriptional regulator, AraC family Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF14_NIAKG
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AEW01602.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_4714_10
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8280..9098
DNA (819bp) protein (273aa)
hypothetical protein Tax=Niabella aurantiaca RepID=UPI0003738120
periplasmic ATP/GTP-binding protein
Periplasmic ATP/GTP-binding protein {ECO:0000313|EMBL:ACU02677.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
PLM3_30_b1_sep16_scaffold_4714_11
Bacteroides cellulosilyticus CAG:158, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9305..11377
DNA (2073bp) protein (691aa)
glycosyl hydrolase family 3 Tax=Cytophagales str. B6 RepID=UPI0003B5C6DD
Uncharacterized protein {ECO:0000313|EMBL:CDB73656.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides cellulosilyticus CAG:158.;"
glycoside hydrolase family protein
PLM3_30_b1_sep16_scaffold_4714_12
Tannerella sp. 6_1_58FAA_CT1, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11377..11670
DNA (294bp) protein (98aa)
glycosyl hydrolase family 3 Tax=Cytophagales str. B6 RepID=UPI0003B5C6DD
Uncharacterized protein {ECO:0000313|EMBL:EHL82578.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella.;" source="Tannerella sp. 6_1_58FAA_CT1.;"
glycoside hydrolase family protein
PLM3_30_b1_sep16_scaffold_4714_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11706..11975
DNA (270bp) protein (90aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TG14_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01617.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_4714_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11972..12694
DNA (723bp) protein (241aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TG14_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01617.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_4714_15
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12751..14409)
DNA (1659bp) protein (553aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TG20_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01623.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Displaying 15 items

View Taxonomy