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PLM3_30_b1_sep16_scaffold_2474

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_2474_1
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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349..2562
DNA (2214bp) protein (738aa)
Alpha-L-rhamnosidase Tax=Niabella soli DSM 19437 RepID=H1NKK7_9SPHI
alpha-rhamnosidase
Alpha-rhamnosidase {ECO:0000313|EMBL:AHF16881.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
PLM3_30_b1_sep16_scaffold_2474_2
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2576..3823
DNA (1248bp) protein (416aa)
Ribulose bisphosphate carboxylase large chain Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YB65_9SPHI
Ribulose bisphosphate carboxylase large chain {ECO:0000313|EMBL:EHQ30591.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
ribulose-bisphosphate carboxylase
PLM3_30_b1_sep16_scaffold_2474_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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3841..5127
DNA (1287bp) protein (429aa)
hypothetical protein Tax=Niabella aurantiaca RepID=UPI00037DF659
type III effector Hrp-dependent outer
Type III effector Hrp-dependent outer {ECO:0000313|EMBL:AEV99888.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_2474_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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5327..5650
DNA (324bp) protein (108aa)
Asp/Glu/hydantoin racemase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNH0_NIAKG
Asp/Glu/hydantoin racemase
Asp/Glu/hydantoin racemase {ECO:0000313|EMBL:AEV99887.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_2474_5
unknown

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comp(5558..5857)
DNA (300bp) protein (100aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_2474_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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5875..7212
DNA (1338bp) protein (446aa)
Bile acid:sodium symporter Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNG9_NIAKG
bile acid:sodium symporter
Bile acid:sodium symporter {ECO:0000313|EMBL:AEV99886.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_2474_7
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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7240..9138
DNA (1899bp) protein (633aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
Glycoside hydrolase family 2 TIM barrel Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YEN1_9SPHI
beta-galactosidase
PLM3_30_b1_sep16_scaffold_2474_8
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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9168..10445
DNA (1278bp) protein (426aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
beta-galactosidase (EC:3.2.1.23)
Glycoside hydrolase family 2 TIM barrel Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YEN1_9SPHI
PLM3_30_b1_sep16_scaffold_2474_9
Anditalea andensis, Anditalea, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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10735..10986
DNA (252bp) protein (84aa)
ABC-type sugar transport system, periplasmic component Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FZ84_ECHVK
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEO74290.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Anditalea.;" source="Anditalea andensis.;"
sugar ABC transporter substrate-binding protein
PLM3_30_b1_sep16_scaffold_2474_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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10937..11890
DNA (954bp) protein (318aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNL3_NIAKG
carbohydrate ABC transporter substrate-binding protein
Carbohydrate ABC transporter substrate-binding protein, CUT1 family {ECO:0000313|EMBL:AEV99930.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_2474_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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11892..13040
DNA (1149bp) protein (383aa)
Formyl-CoA transferase {ECO:0000313|EMBL:AEV99929.1}; EC=2.8.3.16 {ECO:0000313|EMBL:AEV99929.1};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Formyl-CoA transferase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNL2_NIAKG
formyl-CoA transferase
PLM3_30_b1_sep16_scaffold_2474_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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13037..14209
DNA (1173bp) protein (391aa)
Formyl-CoA transferase {ECO:0000313|EMBL:AEV99928.1}; EC=2.8.3.16 {ECO:0000313|EMBL:AEV99928.1};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Formyl-CoA transferase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNL1_NIAKG
formyl-CoA transferase
PLM3_30_b1_sep16_scaffold_2474_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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14209..14442
DNA (234bp) protein (78aa)
Amidohydrolase 2 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNL0_NIAKG
amidohydrolase 2
Amidohydrolase 2 {ECO:0000313|EMBL:AEV99927.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_2474_14
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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14414..15019
DNA (606bp) protein (202aa)
Putative TIM-barrel fold metal-dependent hydrolase Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FY27_ECHVK
TIM-barrel fold metal-dependent hydrolase
Putative TIM-barrel fold metal-dependent hydrolase {ECO:0000313|EMBL:AGA77953.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
PLM3_30_b1_sep16_scaffold_2474_15
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(15046..15954)
DNA (909bp) protein (303aa)
Transcriptional regulator, AraC family Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNG4_NIAKG
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AEV99881.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_2474_16
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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16008..17090
DNA (1083bp) protein (361aa)
Extracellular solute-binding protein family 1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YB68_9SPHI
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:EHQ30594.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
oxidoreductase domain-containing protein
PLM3_30_b1_sep16_scaffold_2474_17
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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17144..17590
DNA (447bp) protein (149aa)
MaoC domain protein dehydratase Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y125_PEDHD
MaoC domain-containing protein dehydratase
MaoC domain protein dehydratase {ECO:0000313|EMBL:ACU04952.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
PLM3_30_b1_sep16_scaffold_2474_18
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17590..18912
DNA (1323bp) protein (441aa)
L-fucose transporter Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YB66_9SPHI
L-fucose transporter {ECO:0000313|EMBL:EHQ30592.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
L-fucose transporter
PLM3_30_b1_sep16_scaffold_2474_19
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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19067..22345
DNA (3279bp) protein (1093aa)
Glycoside hydrolase family 2 sugar binding Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PA68_CHIPD
glycoside hydrolase
Glycoside hydrolase family 2 sugar binding {ECO:0000313|EMBL:ACU59305.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
PLM3_30_b1_sep16_scaffold_2474_20
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(22711..23784)
DNA (1074bp) protein (358aa)
Non-reducing end beta-L-arabinofuranosidase {ECO:0000313|EMBL:KHJ36797.1}; EC=3.2.1.185 {ECO:0000313|EMBL:KHJ36797.1};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
Uncharacterized protein Tax=Sphingobacterium sp. (strain 21) RepID=F4CDE5_SPHS2
hypothetical protein
Displaying 20 items

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