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PLM3_30_b1_sep16_scaffold_3105

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_3105_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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1..375
DNA (375bp) protein (125aa)
Cell shape-determining protein MreC Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMS4_NIAKG
rod shape-determining protein MreC
Rod shape-determining protein MreC {ECO:0000313|EMBL:AEW03095.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_3105_2
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

372..905
DNA (534bp) protein (178aa)
Rod shape-determining protein MreD Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMS5_NIAKG
Rod shape-determining protein MreD {ECO:0000313|EMBL:KIC92383.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
rod shape-determining protein MreD
PLM3_30_b1_sep16_scaffold_3105_3
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1037..3118
DNA (2082bp) protein (694aa)
Peptidoglycan glycosyltransferase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMS6_NIAKG
Penicillin-binding protein {ECO:0000313|EMBL:GAO45101.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
peptidoglycan glycosyltransferase
PLM3_30_b1_sep16_scaffold_3105_4
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3158..4294
DNA (1137bp) protein (379aa)
Cell cycle protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMS7_NIAKG
Cell cycle protein {ECO:0000313|EMBL:KIC94559.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
cell cycle protein
PLM3_30_b1_sep16_scaffold_3105_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4399..5136
DNA (738bp) protein (246aa)
Beta-lactamase domain protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMS8_NIAKG
beta-lactamase
Beta-lactamase domain protein {ECO:0000313|EMBL:AEW03099.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_3105_6
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(5217..5597)
DNA (381bp) protein (127aa)
GTP-binding signal recognition particle Tax=Melioribacter roseus (strain P3M) RepID=I7A3Q8_MELRP
GTP-binding signal recognition particle
GTP-binding signal recognition particle {ECO:0000313|EMBL:AFN74521.1}; species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" source="Melioribacter roseus (strain JCM 17771 / P3M-2).;"
PLM3_30_b1_sep16_scaffold_3105_7
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5895..6311)
DNA (417bp) protein (139aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMS9_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:GAO45098.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_3105_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6322..7080)
DNA (759bp) protein (253aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMT0_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW03101.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_3105_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7114..7665)
DNA (552bp) protein (184aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMT1_NIAKG
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEW03102.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_3105_10
unknown

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comp(7752..8537)
DNA (786bp) protein (262aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_3105_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8575..8850)
DNA (276bp) protein (92aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000313|EMBL:AEW03105.1}; EC=2.2.1.7 {ECO:0000313|EMBL:AEW03105.1};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
1-deoxy-D-xylulose-5-phosphate synthase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMT4_NIAKG
1-deoxy-D-xylulose-5-phosphate synthase
PLM3_30_b1_sep16_scaffold_3105_12
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8900..9484)
DNA (585bp) protein (195aa)
Transketolase central region Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PD61_CHIPD
transketolase
Transketolase central region {ECO:0000313|EMBL:ACU57684.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
PLM3_30_b1_sep16_scaffold_3105_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9678..10733)
DNA (1056bp) protein (352aa)
UDP-galactose 4-epimerase {ECO:0000313|EMBL:AEW03106.1}; EC=5.1.3.2 {ECO:0000313|EMBL:AEW03106.1};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
UDP-galactose 4-epimerase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMT5_NIAKG
UDP-galactose 4-epimerase
PLM3_30_b1_sep16_scaffold_3105_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10756..11616)
DNA (861bp) protein (287aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Glucose-1-phosphate thymidylyltransferase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMT6_NIAKG
glucose-1-phosphate thymidylyltransferase
PLM3_30_b1_sep16_scaffold_3105_15
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11706..12557)
DNA (852bp) protein (284aa)
inorganic phosphate transporter Tax=Flavobacterium antarcticum RepID=UPI0003B59A0B
Inorganic phosphate transporter {ECO:0000313|EMBL:KIC92391.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
inorganic phosphate transporter, PiT family
PLM3_30_b1_sep16_scaffold_3105_16
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12635..13282)
DNA (648bp) protein (216aa)
Putative phosphate transport regulator Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMT8_NIAKG
Phosphate transport regulator {ECO:0000313|EMBL:KIC94553.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
putative phosphate transport regulator
PLM3_30_b1_sep16_scaffold_3105_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14121..14696
DNA (576bp) protein (192aa)
Phosphate-selective porin O and P Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMT9_NIAKG
phosphate-selective porin O and P
Phosphate-selective porin O and P {ECO:0000313|EMBL:AEW03110.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_3105_18
unknown

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comp(14600..14884)
DNA (285bp) protein (95aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_3105_19
Kordia algicida, Kordia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(15992..16636)
DNA (645bp) protein (215aa)
Uncharacterized protein Tax=Kordia algicida OT-1 RepID=A9DS32_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EDP96879.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Kordia.;" source="Kordia algicida OT-1.;"
PLM3_30_b1_sep16_scaffold_3105_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17049..17390
DNA (342bp) protein (114aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFJ7_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV98428.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_3105_21
Thermanaerovibrio acidaminovorans, Thermanaerovibrio, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

17512..17940
DNA (429bp) protein (143aa)
Uncharacterized protein Tax=Thermanaerovibrio acidaminovorans (strain ATCC 49978 / DSM 6589 / Su883) RepID=D1B8Y8_THEAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ18741.1}; Flags: Precursor;; species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Thermanaerovibrio.;" source="Thermanaerovibrio acidaminovorans (strain ATCC 49978 / DSM 6589 /; Su883) (Selenomonas acidaminovorans).;"
PLM3_30_b1_sep16_scaffold_3105_22
Rhodonellum psychrophilum, Rhodonellum, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(18014..18766)
DNA (753bp) protein (251aa)
Uncharacterized protein Tax=Rhodonellum RepID=U5BSK8_9BACT
uncharacterized protein
Uncharacterized protein {ECO:0000313|EMBL:ERM80858.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Rhodonellum.;" source="Rhodonellum psychrophilum GCM71 = DSM 17998.;"
PLM3_30_b1_sep16_scaffold_3105_23
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18793..22044)
DNA (3252bp) protein (1084aa)
TolB protein Tax=Indibacter alkaliphilus LW1 RepID=S2EBL4_9BACT
Peptidase S41 {ECO:0000313|EMBL:KIC92434.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
peptidase S41
PLM3_30_b1_sep16_scaffold_3105_24
unknown

Not on your lists

22110..22199
DNA (90bp) protein (30aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_3105_25
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22162..23013
DNA (852bp) protein (284aa)
Endonuclease/exonuclease/phosphatase Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KUU9_HALH1
Uncharacterized protein {ECO:0000313|EMBL:KIC91628.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_3105_26
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23019..23732
DNA (714bp) protein (238aa)
Peptidase M23 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP46_NIAKG
peptidase M23
Peptidase M23 {ECO:0000313|EMBL:AEW03164.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_3105_27
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24107..24769)
DNA (663bp) protein (221aa)
NADP oxidoreductase coenzyme F420-dependent Tax=Niabella soli DSM 19437 RepID=H1NTA5_9SPHI
DNA-binding protein
DNA-binding protein {ECO:0000313|EMBL:AHF16790.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
PLM3_30_b1_sep16_scaffold_3105_28
GWB2_Bacteroidetes_41_8_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24783..25667)
DNA (885bp) protein (295aa)
NmrA family protein Tax=Cytophaga aurantiaca RepID=UPI0003808949
hypothetical protein
Tax=GWB2_Bacteroidetes_41_8_curated
PLM3_30_b1_sep16_scaffold_3105_29
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25702..26109)
DNA (408bp) protein (136aa)
Transcriptional regulator, MarR family Tax=Fibrisoma limi BUZ 3 RepID=I2GD19_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KIC92878.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
MarR family transcriptional regulator
PLM3_30_b1_sep16_scaffold_3105_30
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26207..27241
DNA (1035bp) protein (345aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Holliday junction ATP-dependent DNA helicase RuvB Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP50_NIAKG
Holliday junction DNA helicase subunit RuvB
Displaying items 1-30 of 33 in total

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