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PLM3_30_b2_sep16_scaffold_4019

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_4019_1
unknown

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comp(2..169)
DNA (168bp) protein (56aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_4019_2
RifOxyA12_full_Deltaproteobacteria_61_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(195..641)
DNA (447bp) protein (149aa)
hypothetical protein Tax=Balneola vulgaris RepID=UPI00036FC749
hypothetical protein
Tax=RifOxyA12_full_Deltaproteobacteria_61_11_curated
PLM3_30_b2_sep16_scaffold_4019_3
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(752..1654)
DNA (903bp) protein (301aa)
putative PAS/PAC sensor protein Tax=Gemmata obscuriglobus RepID=UPI00016C46BE
PAS/PAC sensor hybrid histidine kinase
Tax=RBG_16_Deltaproteobacteria_49_23_curated
PLM3_30_b2_sep16_scaffold_4019_4
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

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comp(1929..2606)
DNA (678bp) protein (226aa)
Response regulator receiver protein bin=GWF2_Lentisphaerae_57_35 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
LuxR family transcriptional regulator
Tax=GWF2_Lentisphaerae_57_35_curated
PLM3_30_b2_sep16_scaffold_4019_5
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(2615..3850)
DNA (1236bp) protein (412aa)
PAS/PAC sensor signal transduction histidine kinase Tax=Opitutaceae bacterium TAV5 RepID=H1ILQ5_9BACT
histidine kinase
Histidine kinase {ECO:0000313|EMBL:AHF92590.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
PLM3_30_b2_sep16_scaffold_4019_6
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(3847..4200)
DNA (354bp) protein (118aa)
KaiB domain-containing protein Tax=Opitutaceae bacterium TAV1 RepID=I6AQP3_9BACT
thiol-disulfide isomerase
Thiol-disulfide isomerase {ECO:0000313|EMBL:AHF92589.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
PLM3_30_b2_sep16_scaffold_4019_7
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(4197..4544)
DNA (348bp) protein (116aa)
KaiB domain-containing protein Tax=Opitutaceae bacterium TAV1 RepID=I6AQP2_9BACT
KaiB domain-containing protein {ECO:0000313|EMBL:EIP97333.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
KaiB 1
PLM3_30_b2_sep16_scaffold_4019_8
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(4554..5840)
DNA (1287bp) protein (429aa)
Putative circadian clock protein, KaiC Tax=Opitutaceae bacterium TAV5 RepID=H1ILQ2_9BACT
KaiC 1
KaiC 1 {ECO:0000313|EMBL:AHF92587.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
PLM3_30_b2_sep16_scaffold_4019_9
unknown

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5882..6298
DNA (417bp) protein (139aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_4019_10
unknown

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comp(6485..6607)
DNA (123bp) protein (41aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_4019_11
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

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comp(6604..7488)
DNA (885bp) protein (295aa)
two-component hybrid sensor and regulator bin=GWF2_Lentisphaerae_57_35 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
histidine kinase
Tax=RBG_13_Planctomycetes_60_9_curated
PLM3_30_b2_sep16_scaffold_4019_12
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

comp(7478..8203)
DNA (726bp) protein (242aa)
two-component hybrid sensor and regulator bin=GWF2_Lentisphaerae_57_35 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
histidine kinase
Tax=GWF2_Lentisphaerae_57_35_curated
PLM3_30_b2_sep16_scaffold_4019_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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8510..9982
DNA (1473bp) protein (491aa)
Two component, sigma54 specific, transcriptional regulator, Fis family Tax=Pedosphaera parvula Ellin514 RepID=B9XL82_9BACT
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:EEF59433.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
two component sigma54 specific Fis family transcriptional regulator
PLM3_30_b2_sep16_scaffold_4019_14
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(10223..11401)
DNA (1179bp) protein (393aa)
fatty acid desaturase (EC:1.14.19.-)
fatty acid desaturase Tax=Verrucomicrobium spinosum RepID=UPI0001746AD9
Tax=GWF2_Verrucomicrobia_62_7_curated
PLM3_30_b2_sep16_scaffold_4019_15

Not on your lists

comp(11403..11744)
DNA (342bp) protein (114aa)
Marine sediment metagenome DNA, contig: S12H4_S14809 {ECO:0000313|EMBL:GAJ06875.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Displaying 15 items

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