ggKbase home page

PLM3_30_b2_sep16_scaffold_3845

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_3845_1
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

3..935
DNA (933bp) protein (311aa)
hypothetical protein Tax=Fervidibacteria bacterium SCGC AAA471-D06 RepID=UPI0003631482
dehydrogenase
Tax=RBG_16_Planctomycetes_64_10_curated
PLM3_30_b2_sep16_scaffold_3845_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

1220..2212
DNA (993bp) protein (331aa)
Xylose isomerase domain protein TIM barrel Tax=Chthoniobacter flavus Ellin428 RepID=B4CVD1_9BACT
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:EDY21373.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
xylose isomerase
PLM3_30_b2_sep16_scaffold_3845_3
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

2244..3302
DNA (1059bp) protein (353aa)
Phosphotriesterase homology protein bin=GWF2_Bacteroidetes_41_9 species=Fibrisoma limi genus=Fibrisoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_9 organism_group=Bacteroidetes
aryldialkylphosphatase
Tax=RBG_16_Aminicenantes_63_16_curated
PLM3_30_b2_sep16_scaffold_3845_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

3684..3890
DNA (207bp) protein (69aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D8E5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY17338.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_3845_5
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4091..4825)
DNA (735bp) protein (245aa)
MIP family channel protein Tax=Desulfotomaculum RepID=F6B4J9_DESCC
MIP family channel protein
MIP family channel protein {ECO:0000313|EMBL:AEF93022.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 /; CO-1-SRB).;"
PLM3_30_b2_sep16_scaffold_3845_6
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(4907..5410)
DNA (504bp) protein (168aa)
Short-chain dehydrogenase/reductase SDR Tax=Solibacter usitatus (strain Ellin6076) RepID=Q026E7_SOLUE
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABJ83122.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3_30_b2_sep16_scaffold_3845_7

Not on your lists

comp(5625..6314)
DNA (690bp) protein (230aa)
Uncharacterized protein Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DF46_SINAD
Marine sediment metagenome DNA, contig: S01H1_S32102 {ECO:0000313|EMBL:GAG33905.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_3845_8
unknown

Not on your lists

6467..6988
DNA (522bp) protein (174aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_3845_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

7225..8007
DNA (783bp) protein (261aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Glucosamine-6-phosphate deaminase Tax=Chthoniobacter flavus Ellin428 RepID=B4D7X3_9BACT
glucosamine-6-phosphate isomerase
PLM3_30_b2_sep16_scaffold_3845_10
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(8345..9523)
DNA (1179bp) protein (393aa)
hypothetical protein Tax=Gemmata obscuriglobus RepID=UPI00016C4E39
Uncharacterized protein {ECO:0000313|EMBL:EDL61251.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
major facilitator superfamily protein
PLM3_30_b2_sep16_scaffold_3845_11
unknown

Not on your lists

9540..10052
DNA (513bp) protein (171aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_3845_12
Planctopirus limnophila, Planctopirus, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(9998..11425)
DNA (1428bp) protein (476aa)
hypothetical protein Tax=Gemmata obscuriglobus RepID=UPI00016C4E39
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADG67847.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
PLM3_30_b2_sep16_scaffold_3845_13
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(11947..13071)
DNA (1125bp) protein (375aa)
Oxidoreductase domain protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D9W0_9BACT
Oxidoreductase domain protein {ECO:0000313|EMBL:EDY16774.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
oxidoreductase domain protein
PLM3_30_b2_sep16_scaffold_3845_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(13539..15041)
DNA (1503bp) protein (501aa)
Peptidase M56 BlaR1 (Fragment) Tax=Pedosphaera parvula Ellin514 RepID=B9XS75_9BACT
Peptidase M56 BlaR1 {ECO:0000313|EMBL:EEF57330.1}; Flags: Precursor; Fragment;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM3_30_b2_sep16_scaffold_3845_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(15041..16459)
DNA (1419bp) protein (473aa)
Peptidase M56 BlaR1 (Fragment) Tax=Pedosphaera parvula Ellin514 RepID=B9XS75_9BACT
Peptidase M56 BlaR1 {ECO:0000313|EMBL:EEF57330.1}; Flags: Precursor; Fragment;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM3_30_b2_sep16_scaffold_3845_16
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16556..16705)
DNA (150bp) protein (50aa)
Methyltryptophan oxidase Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SH08_9RHIZ
methyltryptophan oxidase
Methyltryptophan oxidase {ECO:0000313|EMBL:AHB49244.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
Displaying 16 items

View Taxonomy