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PLM3_30_b2_sep16_scaffold_77

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_77_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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2..904
DNA (903bp) protein (301aa)
GTPase HflX Tax=Pedosphaera parvula Ellin514 RepID=B9XPW1_9BACT
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
HSR1-like GTP-binding protein
PLM3_30_b2_sep16_scaffold_77_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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999..1709
DNA (711bp) protein (237aa)
DNA repair protein RadC Tax=Pedosphaera parvula Ellin514 RepID=B9XSW5_9BACT
DNA repair protein RadC {ECO:0000313|EMBL:EEF57074.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_77_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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2046..3050
DNA (1005bp) protein (335aa)
Glycosyl transferase family 2 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ23_9BACT
Glycosyl transferase family 2 {ECO:0000313|EMBL:EEF60250.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glycosyltransferase family 2
PLM3_30_b2_sep16_scaffold_77_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

3307..3579
DNA (273bp) protein (91aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XC11_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62479.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM3_30_b2_sep16_scaffold_77_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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3731..4210
DNA (480bp) protein (160aa)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|SAAS:SAAS00064156}; EC=2.3.1.129 {ECO:0000256|SAAS:SAAS00001267};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase Tax=Pedosphaera parvula Ellin514 RepID=B9XRT0_9BACT
lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
PLM3_30_b2_sep16_scaffold_77_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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5030..5890
DNA (861bp) protein (287aa)
Uncharacterized protein Tax=Cupriavidus basilensis OR16 RepID=H1RZL7_9BURK
Bll5312 protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_30_b2_sep16_scaffold_77_trna_1
unknown

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6225..6308
DNA (84bp)
transferRNA Leu
PLM3_30_b2_sep16_scaffold_77_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(6405..8117)
DNA (1713bp) protein (571aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4DBA1_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91329.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM3_30_b2_sep16_scaffold_77_8
RLO_PLX_64_10, Bacteria

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8327..10225
DNA (1899bp) protein (633aa)
Uncharacterized protein Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CGP0_THET1
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3_30_b2_sep16_scaffold_77_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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10324..11511
DNA (1188bp) protein (396aa)
Catalytic domain of component of various dehydrogenase complexes Tax=Pedosphaera parvula Ellin514 RepID=B9XRZ8_9BACT
Catalytic domain of component of various dehydrogenase complexes {ECO:0000313|EMBL:EEF57369.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
catalytic domain of components of various dehydrogenase complexes
PLM3_30_b2_sep16_scaffold_77_trna_2
unknown

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11582..11654
DNA (73bp)
transferRNA Lys
PLM3_30_b2_sep16_scaffold_77_10
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11879..13993
DNA (2115bp) protein (705aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
PAS sensor, signal transduction histidine kinase Tax=Nitrococcus mobilis Nb-231 RepID=A4BMD8_9GAMM
sensory box protein
PLM3_30_b2_sep16_scaffold_77_11
unknown

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14244..14465
DNA (222bp) protein (74aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_77_12
Burkholderia phenoliruptrix, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14472..15167
DNA (696bp) protein (232aa)
Two component LuxR family transcriptional regulator Tax=Burkholderia phenoliruptrix BR3459a RepID=K0E2K8_9BURK
two component LuxR family transcriptional regulator
Two component LuxR family transcriptional regulator {ECO:0000313|EMBL:AFT90004.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phenoliruptrix BR3459a.;"
PLM3_30_b2_sep16_scaffold_77_13
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15413..15658
DNA (246bp) protein (82aa)
Putative transporter Tax=Ralstonia solanacearum RepID=D8P159_RALSL
putative transport protein
Putative transporter {ECO:0000313|EMBL:CBJ50659.2}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (Pseudomonas solanacearum).;"
PLM3_30_b2_sep16_scaffold_77_14
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15667..17355
DNA (1689bp) protein (563aa)
transporter Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000375EBD4
hypothetical protein
Uncharacterized transporter bll3476; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
PLM3_30_b2_sep16_scaffold_77_15
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17382..19022
DNA (1641bp) protein (547aa)
Aspartate 4-decarboxylase Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KW80_SOLCM
aspartate 4-decarboxylase
Aspartate 4-decarboxylase {ECO:0000313|EMBL:AFD07101.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
PLM3_30_b2_sep16_scaffold_77_16
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19087..20148
DNA (1062bp) protein (354aa)
ansB2; L-asparaginase 2 (EC:3.5.1.1)
L-asparaginase 2 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HU73_ACHXA
L-asparaginase {ECO:0000313|EMBL:KGY27691.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
PLM3_30_b2_sep16_scaffold_77_17
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

20183..21619
DNA (1437bp) protein (479aa)
hypothetical protein Tax=Rubritalea marina RepID=UPI0003787FE1
Uncharacterized protein {ECO:0000313|EMBL:EDY16294.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_77_18
Burkholderia phymatum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21786..22121
DNA (336bp) protein (112aa)
Response regulator receiver protein Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JEF9_BURP8
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ACC69836.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phymatum (strain DSM 17167 / STM815).;"
PLM3_30_b2_sep16_scaffold_77_19
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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22229..22978
DNA (750bp) protein (250aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000381670D
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM3_30_b2_sep16_scaffold_77_20
Photobacterium halotolerans, Photobacterium, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23056..23697
DNA (642bp) protein (214aa)
Uncharacterized protein Tax=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) RepID=I0IEL3_PHYMF
DNA repair protein {ECO:0000313|EMBL:KDM92148.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.;" source="Photobacterium halotolerans.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_77_21
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23823..24479
DNA (657bp) protein (219aa)
Uncharacterized protein bin=GWC2_Geobacteraceae_55_20 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWC2_Geobacteraceae_55_20_curated
PLM3_30_b2_sep16_scaffold_77_22
unknown

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comp(24558..24791)
DNA (234bp) protein (78aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_77_23
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

24933..26354
DNA (1422bp) protein (474aa)
pyridine nucleotide-disulfide oxidoreductase Tax=Gemmata obscuriglobus RepID=UPI00016C3AC9
sthA; soluble pyridine nucleotide transhydrogenase
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
PLM3_30_b2_sep16_scaffold_77_24
Burkholderia sp. MR1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26485..27765
DNA (1281bp) protein (427aa)
hypothetical protein Tax=Hymenobacter aerophilus RepID=UPI00036F4F14
Uncharacterized protein {ECO:0000313|EMBL:KIG11007.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MR1.;"
hypothetical protein
Displaying 26 items

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